ABOUTMENU
HELP
NEWS
BBIP1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.9 nTPM
HPA:26.9 nTPM
GTEx:37.6 nTPM
FANTOM5:61.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.7
1870 Female, age 42, unknown 26.9
1833 Male, age 53, unknown 26.1
1830 Male, age 51, unknown 26.0
2411 Female, age 72, unknown 25.4
2219 Male, age 76, both hemispheres 25.3
2828 Female, age 72, unknown 24.6
2019 Male, age 18, unknown 24.1
1827 Male, age 72, unknown 24.0
2666 Male, age 74, left hemisphere 22.8
2586 Male, age 75, left hemisphere 21.9
Dorsal raphe nucleus
nTPM: 24.7
2750 Male, age 76, both hemispheres 26.6
2016 Female, age 72, unknown 25.4
1828 Male, age 53, unknown 24.7
2298 Female, age 72, unknown 23.8
2047 Male, age 72, unknown 23.2
Inferior colliculus
nTPM: 25.0
1848 Female, age 42, unknown 25.6
2849 Male, age 72, unknown 25.1
1890 Male, age 53, unknown 24.9
2097 Female, age 72, unknown 24.4
Median raphe nucleus
nTPM: 24.5
2220 Male, age 76, midline 24.5
Pedunculopontine tegmental nucleus
nTPM: 25.4
2338 Male, age 61, both hemispheres 25.8
2334 Male, age 80, both hemispheres 25.6
1921 Female, age 85, both hemispheres 24.7
Periaquaductal grey, anterior
nTPM: 23.3
2502 Female, age 75, unknown 24.2
1947 Male, age 18, unknown 23.6
1795 Male, age 51, unknown 22.2
Periaquaductal grey, dorsal
nTPM: 24.7
1831 Male, age 72, unknown 24.9
2464 Female, age 72, unknown 24.8
2850 Male, age 76, both hemispheres 24.8
1840 Male, age 53, unknown 24.3
Periaquaductal grey, lateral
nTPM: 25.7
2272 Male, age 74, both hemispheres 27.0
2053 Male, age 18, unknown 25.9
2140 Male, age 76, both hemispheres 24.2
Pretectal area
nTPM: 25.0
2273 Male, age 74, both hemispheres 29.1
1815 Male, age 53, unknown 26.4
2224 Female, age 72, unknown 25.8
2316 Male, age 76, right hemisphere 25.5
2825 Male, age 18, unknown 25.1
2667 Female, age 75, unknown 24.8
2407 Male, age 75, both hemispheres 24.7
1944 Female, age 72, unknown 24.4
1817 Female, age 42, unknown 24.0
2007 Male, age 72, unknown 23.0
1816 Male, age 51, unknown 22.8
Red nucleus
nTPM: 26.9
1821 Female, age 72, unknown 30.2
1865 Male, age 51, unknown 29.9
1954 Female, age 42, unknown 29.1
2823 Male, age 76, right hemisphere 28.8
1904 Male, age 53, unknown 27.5
2769 Male, age 72, unknown 26.9
2227 Male, age 72, unknown 26.4
2503 Female, age 72, unknown 26.3
2785 Male, age 18, unknown 26.2
2725 Female, age 75, unknown 24.5
2584 Male, age 75, left hemisphere 24.2
2588 Male, age 74, left hemisphere 23.0
Substantia nigra
nTPM: 24.8
2699 Male, age 18, unknown 27.3
1889 Female, age 72, unknown 26.3
2241 Male, age 72, unknown 25.9
2583 Male, age 75, right hemisphere 25.5
1851 Male, age 51, unknown 25.3
2590 Female, age 75, unknown 24.8
1916 Female, age 42, unknown 24.0
1941 Male, age 53, unknown 23.5
2409 Female, age 72, unknown 23.3
2665 Male, age 74, both hemispheres 21.9
Superior colliculus
nTPM: 25.5
1913 Female, age 42, unknown 28.9
1995 Male, age 72, unknown 28.8
1895 Male, age 76, right hemisphere 27.2
2668 Female, age 75, unknown 26.6
2587 Male, age 74, left hemisphere 26.0
1839 Male, age 51, unknown 25.9
1796 Male, age 53, unknown 23.6
2087 Female, age 72, unknown 23.5
2261 Male, age 18, unknown 23.3
2664 Male, age 75, both hemispheres 21.4
Ventral tegmental area
nTPM: 24.9
2410 Female, age 72, unknown 26.1
1915 Female, age 42, unknown 25.3
2021 Male, age 53, unknown 25.0
2223 Female, age 72, unknown 24.9
2218 Male, age 76, both hemispheres 24.7
1942 Male, age 51, unknown 23.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.6
Samples: 139

Max nTPM: 68.1
Min nTPM: 25.2
Std nTPM: 8.1
Median nTPM: 35.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 68.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 61.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 60.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 58.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 57.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 56.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 56.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 56.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 55.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 54.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 50.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.3
FF:10158-103A5 76 years, female 61.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.