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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.4 nTPM
HPA:23.4 nTPM
GTEx:15.8 nTPM
FANTOM5:3.3 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:1.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.6
1870 Female, age 42, unknown 21.3
1827 Male, age 72, unknown 20.6
2219 Male, age 76, both hemispheres 19.8
2828 Female, age 72, unknown 19.8
2411 Female, age 72, unknown 19.7
2666 Male, age 74, left hemisphere 19.6
2586 Male, age 75, left hemisphere 19.3
1830 Male, age 51, unknown 18.8
1833 Male, age 53, unknown 18.8
2019 Male, age 18, unknown 18.3
Dorsal raphe nucleus
nTPM: 21.1
2298 Female, age 72, unknown 25.5
2047 Male, age 72, unknown 21.6
1828 Male, age 53, unknown 20.3
2750 Male, age 76, both hemispheres 19.4
2016 Female, age 72, unknown 18.8
Inferior colliculus
nTPM: 19.6
2097 Female, age 72, unknown 21.0
1890 Male, age 53, unknown 19.6
1848 Female, age 42, unknown 18.9
2849 Male, age 72, unknown 18.8
Median raphe nucleus
nTPM: 23.4
2220 Male, age 76, midline 23.4
Pedunculopontine tegmental nucleus
nTPM: 19.8
2334 Male, age 80, both hemispheres 20.8
1921 Female, age 85, both hemispheres 19.7
2338 Male, age 61, both hemispheres 18.9
Periaquaductal grey, anterior
nTPM: 21.9
1795 Male, age 51, unknown 24.7
1947 Male, age 18, unknown 21.0
2502 Female, age 75, unknown 19.9
Periaquaductal grey, dorsal
nTPM: 23.2
2850 Male, age 76, both hemispheres 25.6
1840 Male, age 53, unknown 23.2
1831 Male, age 72, unknown 22.7
2464 Female, age 72, unknown 21.1
Periaquaductal grey, lateral
nTPM: 23.2
2272 Male, age 74, both hemispheres 26.1
2053 Male, age 18, unknown 23.1
2140 Male, age 76, both hemispheres 20.5
Pretectal area
nTPM: 21.4
2273 Male, age 74, both hemispheres 27.9
2224 Female, age 72, unknown 21.8
2825 Male, age 18, unknown 21.2
1944 Female, age 72, unknown 21.1
1816 Male, age 51, unknown 20.9
2407 Male, age 75, both hemispheres 20.9
2316 Male, age 76, right hemisphere 20.8
2667 Female, age 75, unknown 20.6
1815 Male, age 53, unknown 20.5
2007 Male, age 72, unknown 20.2
1817 Female, age 42, unknown 19.4
Red nucleus
nTPM: 18.7
2725 Female, age 75, unknown 20.0
2584 Male, age 75, left hemisphere 19.7
2588 Male, age 74, left hemisphere 19.4
2503 Female, age 72, unknown 18.8
2769 Male, age 72, unknown 18.6
2227 Male, age 72, unknown 18.4
1821 Female, age 72, unknown 18.3
1954 Female, age 42, unknown 18.3
2785 Male, age 18, unknown 18.3
1865 Male, age 51, unknown 18.2
1904 Male, age 53, unknown 18.2
2823 Male, age 76, right hemisphere 18.2
Substantia nigra
nTPM: 20.5
2699 Male, age 18, unknown 21.6
1941 Male, age 53, unknown 21.4
2590 Female, age 75, unknown 20.8
1889 Female, age 72, unknown 20.6
2409 Female, age 72, unknown 20.6
1851 Male, age 51, unknown 20.4
2583 Male, age 75, right hemisphere 20.4
1916 Female, age 42, unknown 19.9
2241 Male, age 72, unknown 19.9
2665 Male, age 74, both hemispheres 19.0
Superior colliculus
nTPM: 21.1
2261 Male, age 18, unknown 23.4
1995 Male, age 72, unknown 22.1
2587 Male, age 74, left hemisphere 22.1
2664 Male, age 75, both hemispheres 21.9
1796 Male, age 53, unknown 21.8
1839 Male, age 51, unknown 20.7
2668 Female, age 75, unknown 20.5
1913 Female, age 42, unknown 19.9
2087 Female, age 72, unknown 19.8
1895 Male, age 76, right hemisphere 19.2
Ventral tegmental area
nTPM: 20.8
2021 Male, age 53, unknown 21.7
2223 Female, age 72, unknown 21.6
1915 Female, age 42, unknown 21.3
1942 Male, age 51, unknown 21.0
2218 Male, age 76, both hemispheres 19.5
2410 Female, age 72, unknown 19.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.8
Samples: 139

Max nTPM: 51.7
Min nTPM: 1.3
Std nTPM: 10.1
Median nTPM: 13.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 51.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 47.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 43.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 42.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 42.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 39.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 38.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 38.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 36.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 33.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 31.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.3
FF:10158-103A5 76 years, female 3.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.9
Pig sample Sample description nTPM
Midbrain
nTPM: 7.5
Samples: 4

Max nTPM: 12.6
Min nTPM: 5.2
Sample A Female 5.3
Sample B Female 6.7
Sample C Male 12.6
Sample D Male 5.2
Periaqueductal gray
nTPM: 8.0
Samples: 3

Max nTPM: 9.2
Min nTPM: 6.9
Sample B Female 9.2
Sample C Male 6.9
Sample D Male 7.8
Substantia nigra
nTPM: 8.6
Samples: 4

Max nTPM: 11.5
Min nTPM: 3.4
Sample A Female 11.5
Sample B Female 9.9
Sample C Male 9.5
Sample D Male 3.4
Superior colliculi
nTPM: 9.9
Samples: 4

Max nTPM: 13.4
Min nTPM: 7.7
Sample A Female 10.4
Sample B Female 13.4
Sample C Male 7.7
Sample D Male 7.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.6
Samples: 4

Max nTPM: 2.9
Min nTPM: 0.2
Sample A Male 1.4
Sample B Male 1.8
Sample C Female 0.2
Sample D Female 2.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70566005 Antisense, RP_050628_02_A08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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