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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:284.2 nTPM
HPA:284.2 nTPM
GTEx:305.1 nTPM
FANTOM5:1786.0 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 284.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 166.3
2288 Male, age 75, left hemisphere 224.9
1781 Male, age 74, unknown 215.6
2846 Female, age 79, unknown 187.8
2290 Female, age 72, unknown 170.0
1857 Female, age 85, left hemisphere 153.3
2289 Male, age 61, right hemisphere 133.2
1854 Male, age 80, left hemisphere 127.1
2481 Female, age 94, left hemisphere 118.5
Claustrum
nTPM: 272.8
2284 Female, age 91, both hemispheres 328.2
2568 Male, age 61, both hemispheres 297.5
1956 Male, age 74, unknown 281.6
2198 Male, age 80, both hemispheres 280.4
2645 Female, age 72, unknown 279.0
2292 Female, age 85, both hemispheres 276.8
2491 Male, age 75, both hemispheres 256.9
2392 Female, age 94, both hemispheres 232.6
2196 Female, age 79, unknown 222.1
Globus pallidus, externus
nTPM: 120.5
2395 Male, age 75, both hemispheres 141.2
2772 Female, age 79, unknown 125.9
1996 Male, age 80, right hemisphere 115.4
2646 Male, age 61, right hemisphere 110.3
2567 Female, age 72, unknown 109.7
Globus pallidus, internus
nTPM: 135.3
2287 Male, age 75, right hemisphere 189.3
2566 Female, age 72, unknown 146.3
1818 Male, age 74, unknown 139.9
2778 Female, age 91, both hemispheres 131.7
2111 Female, age 85, right hemisphere 121.3
2037 Male, age 80, right hemisphere 109.4
2483 Female, age 94, right hemisphere 109.0
Nucleus accumbens
nTPM: 165.2
2286 Male, age 75, left hemisphere 191.1
2698 Female, age 72, unknown 189.0
1783 Male, age 74, unknown 188.6
1856 Female, age 91, right hemisphere 179.4
2824 Male, age 61, right hemisphere 166.7
1806 Female, age 85, left hemisphere 156.9
2391 Female, age 94, left hemisphere 132.0
2732 Male, age 80, right hemisphere 117.7
Nucleus basalis of Meynert
nTPM: 129.2
2821 Male, age 75, both hemispheres 172.1
2484 Female, age 94, left hemisphere 124.3
2393 Male, age 80, right hemisphere 121.8
2569 Male, age 61, both hemispheres 98.6
Nucleus of the diagonal band
nTPM: 284.2
2195 Female, age 85, both hemispheres 335.7
2775 Male, age 80, right hemisphere 311.9
2029 Male, age 61, right hemisphere 292.3
1812 Female, age 91, both hemispheres 283.6
1979 Male, age 74, unknown 197.5
Olfactory tubercle
nTPM: 270.3
2487 Female, age 94, left hemisphere 298.9
1998 Female, age 91, both hemispheres 297.7
2856 Male, age 75, right hemisphere 247.0
1846 Male, age 80, right hemisphere 237.6
Putamen
nTPM: 143.7
1829 Male, age 74, unknown 171.7
1937 Female, age 91, right hemisphere 160.2
2466 Female, age 79, unknown 152.4
1838 Male, age 80, right hemisphere 149.4
2647 Male, age 75, left hemisphere 148.2
2482 Female, age 94, left hemisphere 116.9
2489 Female, age 72, unknown 106.9
Septal nuclei
nTPM: 242.0
2629 Female, age 94, right hemisphere 324.2
1960 Male, age 74, unknown 318.9
2031 Female, age 72, unknown 284.0
2009 Female, age 91, both hemispheres 224.9
2059 Female, age 85, both hemispheres 217.6
2394 Male, age 61, left hemisphere 191.2
2199 Male, age 80, right hemisphere 133.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 305.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 232.4
Samples: 246

Max nTPM: 648.1
Min nTPM: 96.5
Std nTPM: 69.4
Median nTPM: 222.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 648.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 426.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 420.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 397.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 391.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 375.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 373.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 371.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 371.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 362.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 355.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 305.1
Samples: 246

Max nTPM: 527.6
Min nTPM: 114.0
Std nTPM: 93.8
Median nTPM: 298.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 527.6
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 527.5
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 514.6
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 508.3
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 483.0
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 481.7
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 475.8
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 471.2
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 470.7
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 470.7
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 462.6
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Brain - Putamen (basal ganglia)
Average nTPM: 235.7
Samples: 205

Max nTPM: 466.1
Min nTPM: 131.7
Std nTPM: 60.1
Median nTPM: 229.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 466.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 438.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 423.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 393.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 376.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 375.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 373.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 368.4
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 349.1
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 346.1
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 336.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1786.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 783.1
FF:10164-103B2 76 years, female 783.1
Globus pallidus
Scaled Tags Per Million: 402.6
FF:10161-103A8 76 years, female 453.1
FF:10175-103C4 60 years, female 352.0
Nucleus accumbens
Scaled Tags Per Million: 1786.0
FF:10037-101F1 23-56 years, mixed 1786.0
Putamen
Scaled Tags Per Million: 1318.8
FF:10176-103C5 60 years, female 1318.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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