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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:255.7 nTPM
HPA:255.7 nTPM
GTEx:264.1 nTPM
FANTOM5:474.0 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 255.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 176.0
2219 Male, age 76, both hemispheres 221.8
1827 Male, age 72, unknown 212.6
2666 Male, age 74, left hemisphere 207.9
2411 Female, age 72, unknown 190.2
2828 Female, age 72, unknown 185.0
1833 Male, age 53, unknown 165.1
2019 Male, age 18, unknown 151.8
2586 Male, age 75, left hemisphere 146.0
1870 Female, age 42, unknown 145.5
1830 Male, age 51, unknown 134.3
Dorsal raphe nucleus
nTPM: 143.5
2750 Male, age 76, both hemispheres 180.2
2298 Female, age 72, unknown 172.2
2047 Male, age 72, unknown 134.7
1828 Male, age 53, unknown 126.5
2016 Female, age 72, unknown 103.9
Inferior colliculus
nTPM: 143.0
2097 Female, age 72, unknown 162.0
2849 Male, age 72, unknown 150.6
1890 Male, age 53, unknown 133.9
1848 Female, age 42, unknown 125.5
Median raphe nucleus
nTPM: 255.7
2220 Male, age 76, midline 255.7
Pedunculopontine tegmental nucleus
nTPM: 175.5
2334 Male, age 80, both hemispheres 204.0
1921 Female, age 85, both hemispheres 184.9
2338 Male, age 61, both hemispheres 137.5
Periaquaductal grey, anterior
nTPM: 190.1
1947 Male, age 18, unknown 202.0
1795 Male, age 51, unknown 197.6
2502 Female, age 75, unknown 170.7
Periaquaductal grey, dorsal
nTPM: 147.2
1831 Male, age 72, unknown 166.0
2850 Male, age 76, both hemispheres 151.8
2464 Female, age 72, unknown 137.7
1840 Male, age 53, unknown 133.2
Periaquaductal grey, lateral
nTPM: 128.7
2053 Male, age 18, unknown 135.5
2140 Male, age 76, both hemispheres 126.5
2272 Male, age 74, both hemispheres 124.0
Pretectal area
nTPM: 203.2
1816 Male, age 51, unknown 312.4
1815 Male, age 53, unknown 274.9
1817 Female, age 42, unknown 259.9
1944 Female, age 72, unknown 241.2
2007 Male, age 72, unknown 233.5
2667 Female, age 75, unknown 215.4
2224 Female, age 72, unknown 161.2
2825 Male, age 18, unknown 160.0
2407 Male, age 75, both hemispheres 149.0
2316 Male, age 76, right hemisphere 119.9
2273 Male, age 74, both hemispheres 108.3
Red nucleus
nTPM: 152.4
2725 Female, age 75, unknown 187.4
2584 Male, age 75, left hemisphere 181.5
2588 Male, age 74, left hemisphere 171.9
1821 Female, age 72, unknown 160.7
2785 Male, age 18, unknown 157.7
2503 Female, age 72, unknown 147.4
2823 Male, age 76, right hemisphere 146.9
1954 Female, age 42, unknown 144.6
1904 Male, age 53, unknown 143.9
2769 Male, age 72, unknown 130.1
2227 Male, age 72, unknown 129.0
1865 Male, age 51, unknown 127.9
Substantia nigra
nTPM: 203.9
1916 Female, age 42, unknown 267.0
1851 Male, age 51, unknown 228.7
1889 Female, age 72, unknown 221.0
2665 Male, age 74, both hemispheres 214.6
1941 Male, age 53, unknown 214.1
2241 Male, age 72, unknown 200.5
2699 Male, age 18, unknown 197.0
2409 Female, age 72, unknown 185.7
2583 Male, age 75, right hemisphere 156.6
2590 Female, age 75, unknown 153.5
Superior colliculus
nTPM: 168.6
2087 Female, age 72, unknown 223.2
1796 Male, age 53, unknown 203.0
2261 Male, age 18, unknown 199.7
2668 Female, age 75, unknown 174.8
2664 Male, age 75, both hemispheres 163.1
1913 Female, age 42, unknown 156.9
1895 Male, age 76, right hemisphere 154.8
1839 Male, age 51, unknown 142.9
2587 Male, age 74, left hemisphere 134.0
1995 Male, age 72, unknown 133.2
Ventral tegmental area
nTPM: 198.5
2218 Male, age 76, both hemispheres 274.5
2410 Female, age 72, unknown 228.3
1915 Female, age 42, unknown 203.2
1942 Male, age 51, unknown 178.9
2223 Female, age 72, unknown 156.0
2021 Male, age 53, unknown 150.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 264.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 264.1
Samples: 139

Max nTPM: 725.8
Min nTPM: 111.2
Std nTPM: 119.4
Median nTPM: 233.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 725.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 704.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 624.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 583.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 567.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 550.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 528.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 503.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 503.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 454.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 444.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 474.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 474.0
FF:10158-103A5 76 years, female 474.0

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The Human Protein Atlas

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