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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:76.8 nTPM
HPA:76.8 nTPM
GTEx:46.3 nTPM
FANTOM5:33.3 Scaled Tags Per Million
Pig:45.6 nTPM
Mouse:15.5 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 76.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 76.8
2481 Female, age 94, left hemisphere 79.7
1854 Male, age 80, left hemisphere 78.8
2290 Female, age 72, unknown 77.3
2846 Female, age 79, unknown 77.2
1857 Female, age 85, left hemisphere 76.5
2288 Male, age 75, left hemisphere 75.3
1781 Male, age 74, unknown 75.0
2289 Male, age 61, right hemisphere 74.1
Claustrum
nTPM: 75.3
1956 Male, age 74, unknown 78.3
2196 Female, age 79, unknown 76.3
2198 Male, age 80, both hemispheres 76.3
2292 Female, age 85, both hemispheres 76.2
2568 Male, age 61, both hemispheres 75.5
2284 Female, age 91, both hemispheres 75.0
2645 Female, age 72, unknown 73.9
2491 Male, age 75, both hemispheres 73.3
2392 Female, age 94, both hemispheres 73.0
Globus pallidus, externus
nTPM: 75.6
2395 Male, age 75, both hemispheres 78.3
1996 Male, age 80, right hemisphere 76.9
2772 Female, age 79, unknown 76.0
2646 Male, age 61, right hemisphere 75.6
2567 Female, age 72, unknown 71.4
Globus pallidus, internus
nTPM: 75.4
2287 Male, age 75, right hemisphere 78.1
1818 Male, age 74, unknown 76.3
2483 Female, age 94, right hemisphere 75.8
2778 Female, age 91, both hemispheres 75.4
2566 Female, age 72, unknown 74.7
2037 Male, age 80, right hemisphere 74.5
2111 Female, age 85, right hemisphere 73.3
Nucleus accumbens
nTPM: 76.2
2286 Male, age 75, left hemisphere 78.3
2391 Female, age 94, left hemisphere 77.7
1856 Female, age 91, right hemisphere 77.5
2698 Female, age 72, unknown 76.3
1806 Female, age 85, left hemisphere 75.9
1783 Male, age 74, unknown 75.8
2824 Male, age 61, right hemisphere 74.6
2732 Male, age 80, right hemisphere 73.7
Nucleus basalis of Meynert
nTPM: 75.3
2821 Male, age 75, both hemispheres 77.6
2393 Male, age 80, right hemisphere 77.0
2484 Female, age 94, left hemisphere 74.4
2569 Male, age 61, both hemispheres 72.1
Nucleus of the diagonal band
nTPM: 76.7
2775 Male, age 80, right hemisphere 77.9
2195 Female, age 85, both hemispheres 76.9
1812 Female, age 91, both hemispheres 76.7
2029 Male, age 61, right hemisphere 76.5
1979 Male, age 74, unknown 75.7
Olfactory tubercle
nTPM: 76.7
1846 Male, age 80, right hemisphere 78.3
2856 Male, age 75, right hemisphere 77.0
1998 Female, age 91, both hemispheres 76.2
2487 Female, age 94, left hemisphere 75.3
Putamen
nTPM: 76.3
2466 Female, age 79, unknown 77.7
1937 Female, age 91, right hemisphere 77.2
2482 Female, age 94, left hemisphere 77.2
2489 Female, age 72, unknown 76.5
1838 Male, age 80, right hemisphere 76.4
2647 Male, age 75, left hemisphere 74.7
1829 Male, age 74, unknown 74.2
Septal nuclei
nTPM: 76.6
2031 Female, age 72, unknown 78.6
1960 Male, age 74, unknown 78.2
2629 Female, age 94, right hemisphere 77.2
2394 Male, age 61, left hemisphere 76.9
2009 Female, age 91, both hemispheres 76.0
2059 Female, age 85, both hemispheres 75.5
2199 Male, age 80, right hemisphere 73.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 46.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.4
Samples: 246

Max nTPM: 101.3
Min nTPM: 11.8
Std nTPM: 12.9
Median nTPM: 41.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 101.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 93.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 91.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 82.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 80.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 76.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 75.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 70.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 69.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 66.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 65.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 45.9
Samples: 246

Max nTPM: 96.9
Min nTPM: 15.8
Std nTPM: 14.6
Median nTPM: 43.3
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 96.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 91.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 91.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 90.9
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 90.5
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 87.8
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 84.2
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 84.1
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 81.2
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 77.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 76.4
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Brain - Putamen (basal ganglia)
Average nTPM: 46.3
Samples: 205

Max nTPM: 100.1
Min nTPM: 7.4
Std nTPM: 14.0
Median nTPM: 44.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 100.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 84.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 80.5
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 79.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 79.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 78.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 78.1
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 77.5
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 73.2
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 72.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 72.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.5
FF:10164-103B2 76 years, female 29.5
Globus pallidus
Scaled Tags Per Million: 27.4
FF:10175-103C4 60 years, female 33.9
FF:10161-103A8 76 years, female 20.9
Nucleus accumbens
Scaled Tags Per Million: 14.8
FF:10037-101F1 23-56 years, mixed 14.8
Putamen
Scaled Tags Per Million: 33.3
FF:10176-103C5 60 years, female 33.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 45.6
Pig sample Sample description nTPM
Caudate
nTPM: 35.2
Samples: 4

Max nTPM: 43.3
Min nTPM: 30.7
Sample A Female 30.7
Sample B Female 33.6
Sample C Male 43.3
Sample D Male 33.2
Putamen
nTPM: 45.6
Samples: 4

Max nTPM: 60.1
Min nTPM: 36.9
Sample A Female 42.4
Sample B Female 36.9
Sample C Male 60.1
Sample D Male 43.1
Septum
nTPM: 34.1
Samples: 4

Max nTPM: 38.2
Min nTPM: 32.4
Sample A Female 32.8
Sample B Female 32.4
Sample C Male 38.2
Sample D Male 32.8
Ventral pallidum
nTPM: 35.7
Samples: 4

Max nTPM: 41.8
Min nTPM: 27.3
Sample A Female 27.3
Sample B Female 41.8
Sample C Male 38.7
Sample D Male 34.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 15.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 15.5
Samples: 4

Max nTPM: 21.2
Min nTPM: 13.0
Sample A Male 13.4
Sample B Male 13.0
Sample C Female 21.2
Sample D Female 14.4
Septum
nTPM: 13.8
Samples: 4

Max nTPM: 18.3
Min nTPM: 11.4
Sample A Male 11.4
Sample B Male 12.8
Sample C Female 18.3
Sample D Female 12.8
Ventral forebrain
nTPM: 11.3
Samples: 4

Max nTPM: 15.7
Min nTPM: 8.7
Sample A Male 15.7
Sample B Male 11.2
Sample C Female 9.4
Sample D Female 8.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
71211365 Antisense, RP_050816_01_D07, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.4
71211365 Antisense, RP_050816_01_D07, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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