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PET100
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:78.1 nTPM
HPA:78.1 nTPM
GTEx:41.3 nTPM
FANTOM5:25.8 Scaled Tags Per Million
Pig:45.0 nTPM
Mouse:15.1 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 78.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.1
2411 Female, age 72, unknown 79.6
1870 Female, age 42, unknown 77.0
2828 Female, age 72, unknown 76.9
1827 Male, age 72, unknown 76.1
2019 Male, age 18, unknown 74.8
2666 Male, age 74, left hemisphere 74.4
1833 Male, age 53, unknown 74.3
1830 Male, age 51, unknown 73.6
2219 Male, age 76, both hemispheres 72.7
2586 Male, age 75, left hemisphere 71.4
Dorsal raphe nucleus
nTPM: 74.7
2016 Female, age 72, unknown 75.9
2750 Male, age 76, both hemispheres 75.9
2047 Male, age 72, unknown 75.4
1828 Male, age 53, unknown 74.9
2298 Female, age 72, unknown 71.4
Inferior colliculus
nTPM: 74.8
1890 Male, age 53, unknown 76.9
2849 Male, age 72, unknown 74.5
2097 Female, age 72, unknown 74.1
1848 Female, age 42, unknown 73.8
Median raphe nucleus
nTPM: 78.1
2220 Male, age 76, midline 78.1
Pedunculopontine tegmental nucleus
nTPM: 76.2
1921 Female, age 85, both hemispheres 77.8
2338 Male, age 61, both hemispheres 76.5
2334 Male, age 80, both hemispheres 74.4
Periaquaductal grey, anterior
nTPM: 73.8
1795 Male, age 51, unknown 74.7
1947 Male, age 18, unknown 74.2
2502 Female, age 75, unknown 72.6
Periaquaductal grey, dorsal
nTPM: 73.8
2850 Male, age 76, both hemispheres 77.0
1840 Male, age 53, unknown 73.0
2464 Female, age 72, unknown 72.8
1831 Male, age 72, unknown 72.5
Periaquaductal grey, lateral
nTPM: 75.2
2140 Male, age 76, both hemispheres 77.6
2053 Male, age 18, unknown 75.0
2272 Male, age 74, both hemispheres 73.1
Pretectal area
nTPM: 75.7
2007 Male, age 72, unknown 78.0
2667 Female, age 75, unknown 77.1
1817 Female, age 42, unknown 76.9
1816 Male, age 51, unknown 76.6
2825 Male, age 18, unknown 76.5
1944 Female, age 72, unknown 75.7
2407 Male, age 75, both hemispheres 75.7
1815 Male, age 53, unknown 75.1
2316 Male, age 76, right hemisphere 74.4
2273 Male, age 74, both hemispheres 73.9
2224 Female, age 72, unknown 73.3
Red nucleus
nTPM: 75.8
2823 Male, age 76, right hemisphere 77.9
1865 Male, age 51, unknown 77.5
2503 Female, age 72, unknown 76.9
2725 Female, age 75, unknown 76.9
1821 Female, age 72, unknown 76.7
2769 Male, age 72, unknown 76.0
2584 Male, age 75, left hemisphere 75.9
1904 Male, age 53, unknown 75.4
2785 Male, age 18, unknown 74.9
1954 Female, age 42, unknown 74.5
2227 Male, age 72, unknown 74.0
2588 Male, age 74, left hemisphere 73.5
Substantia nigra
nTPM: 74.6
1916 Female, age 42, unknown 78.5
1941 Male, age 53, unknown 76.4
1851 Male, age 51, unknown 75.5
1889 Female, age 72, unknown 74.7
2409 Female, age 72, unknown 74.3
2590 Female, age 75, unknown 74.3
2699 Male, age 18, unknown 74.1
2665 Male, age 74, both hemispheres 73.4
2583 Male, age 75, right hemisphere 72.7
2241 Male, age 72, unknown 72.4
Superior colliculus
nTPM: 74.3
2587 Male, age 74, left hemisphere 76.3
1913 Female, age 42, unknown 75.7
1995 Male, age 72, unknown 75.6
1895 Male, age 76, right hemisphere 75.4
2261 Male, age 18, unknown 74.5
1796 Male, age 53, unknown 74.1
2087 Female, age 72, unknown 74.0
2668 Female, age 75, unknown 73.5
2664 Male, age 75, both hemispheres 71.9
1839 Male, age 51, unknown 71.7
Ventral tegmental area
nTPM: 75.8
2410 Female, age 72, unknown 77.8
1915 Female, age 42, unknown 76.5
2223 Female, age 72, unknown 75.9
1942 Male, age 51, unknown 75.7
2218 Male, age 76, both hemispheres 74.7
2021 Male, age 53, unknown 74.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.3
Samples: 139

Max nTPM: 96.8
Min nTPM: 13.7
Std nTPM: 12.0
Median nTPM: 41.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 96.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 81.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 68.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 66.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 66.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 62.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 61.1
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 61.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 58.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 58.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 57.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.8
FF:10158-103A5 76 years, female 25.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.0
Pig sample Sample description nTPM
Midbrain
nTPM: 45.0
Samples: 4

Max nTPM: 51.8
Min nTPM: 34.8
Sample A Female 51.8
Sample B Female 43.3
Sample C Male 49.9
Sample D Male 34.8
Periaqueductal gray
nTPM: 36.5
Samples: 3

Max nTPM: 44.4
Min nTPM: 29.8
Sample B Female 29.8
Sample C Male 44.4
Sample D Male 35.2
Substantia nigra
nTPM: 43.7
Samples: 4

Max nTPM: 58.1
Min nTPM: 37.1
Sample A Female 58.1
Sample B Female 37.3
Sample C Male 42.1
Sample D Male 37.1
Superior colliculi
nTPM: 37.5
Samples: 4

Max nTPM: 52.1
Min nTPM: 23.2
Sample A Female 52.1
Sample B Female 23.2
Sample C Male 42.9
Sample D Male 31.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.1
Samples: 4

Max nTPM: 18.5
Min nTPM: 11.3
Sample A Male 14.4
Sample B Male 16.3
Sample C Female 11.3
Sample D Female 18.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
71211365 Antisense, RP_050816_01_D07, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.