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LYRM9
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.8 nTPM
HPA:24.8 nTPM
GTEx:39.1 nTPM
FANTOM5:10.9 Scaled Tags Per Million
Pig:10.4 nTPM
Mouse:15.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.6
2586 Male, age 75, left hemisphere 28.7
1827 Male, age 72, unknown 26.4
1870 Female, age 42, unknown 25.5
2219 Male, age 76, both hemispheres 23.3
2828 Female, age 72, unknown 23.3
1833 Male, age 53, unknown 23.1
2666 Male, age 74, left hemisphere 22.2
1830 Male, age 51, unknown 21.8
2411 Female, age 72, unknown 21.8
2019 Male, age 18, unknown 20.2
Dorsal raphe nucleus
nTPM: 22.6
2047 Male, age 72, unknown 24.0
2750 Male, age 76, both hemispheres 23.1
2298 Female, age 72, unknown 22.8
1828 Male, age 53, unknown 21.9
2016 Female, age 72, unknown 21.2
Inferior colliculus
nTPM: 22.2
2849 Male, age 72, unknown 23.4
1848 Female, age 42, unknown 22.8
1890 Male, age 53, unknown 21.6
2097 Female, age 72, unknown 21.0
Median raphe nucleus
nTPM: 22.7
2220 Male, age 76, midline 22.7
Pedunculopontine tegmental nucleus
nTPM: 24.0
2338 Male, age 61, both hemispheres 26.6
2334 Male, age 80, both hemispheres 24.5
1921 Female, age 85, both hemispheres 20.9
Periaquaductal grey, anterior
nTPM: 24.8
1795 Male, age 51, unknown 26.2
1947 Male, age 18, unknown 24.4
2502 Female, age 75, unknown 23.8
Periaquaductal grey, dorsal
nTPM: 22.6
1840 Male, age 53, unknown 24.0
2464 Female, age 72, unknown 22.8
2850 Male, age 76, both hemispheres 22.4
1831 Male, age 72, unknown 21.3
Periaquaductal grey, lateral
nTPM: 23.2
2053 Male, age 18, unknown 25.3
2272 Male, age 74, both hemispheres 22.5
2140 Male, age 76, both hemispheres 21.8
Pretectal area
nTPM: 23.1
1816 Male, age 51, unknown 25.1
2825 Male, age 18, unknown 25.1
2407 Male, age 75, both hemispheres 24.8
2224 Female, age 72, unknown 24.3
1817 Female, age 42, unknown 23.1
1815 Male, age 53, unknown 23.0
2007 Male, age 72, unknown 22.6
1944 Female, age 72, unknown 22.5
2667 Female, age 75, unknown 22.3
2273 Male, age 74, both hemispheres 20.7
2316 Male, age 76, right hemisphere 20.6
Red nucleus
nTPM: 20.8
2584 Male, age 75, left hemisphere 25.4
2588 Male, age 74, left hemisphere 23.8
2725 Female, age 75, unknown 21.6
2769 Male, age 72, unknown 20.5
2227 Male, age 72, unknown 20.3
2503 Female, age 72, unknown 20.3
1954 Female, age 42, unknown 20.1
2785 Male, age 18, unknown 20.1
1821 Female, age 72, unknown 20.0
2823 Male, age 76, right hemisphere 19.5
1865 Male, age 51, unknown 19.3
1904 Male, age 53, unknown 19.2
Substantia nigra
nTPM: 23.6
2590 Female, age 75, unknown 25.1
2241 Male, age 72, unknown 24.8
1916 Female, age 42, unknown 24.2
2409 Female, age 72, unknown 24.1
2583 Male, age 75, right hemisphere 23.9
1941 Male, age 53, unknown 23.6
2665 Male, age 74, both hemispheres 23.6
1851 Male, age 51, unknown 22.9
2699 Male, age 18, unknown 22.6
1889 Female, age 72, unknown 21.0
Superior colliculus
nTPM: 23.1
2664 Male, age 75, both hemispheres 28.7
1796 Male, age 53, unknown 24.8
2261 Male, age 18, unknown 24.6
1839 Male, age 51, unknown 23.6
1895 Male, age 76, right hemisphere 23.5
2087 Female, age 72, unknown 23.3
2668 Female, age 75, unknown 22.1
2587 Male, age 74, left hemisphere 21.0
1913 Female, age 42, unknown 20.1
1995 Male, age 72, unknown 19.4
Ventral tegmental area
nTPM: 23.1
2223 Female, age 72, unknown 24.7
1915 Female, age 42, unknown 23.9
1942 Male, age 51, unknown 23.3
2021 Male, age 53, unknown 23.3
2410 Female, age 72, unknown 21.7
2218 Male, age 76, both hemispheres 21.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.1
Samples: 139

Max nTPM: 149.1
Min nTPM: 8.6
Std nTPM: 16.3
Median nTPM: 37.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 149.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 103.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 82.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 75.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 71.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 71.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 70.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 59.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 56.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 56.0
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 55.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.9
FF:10158-103A5 76 years, female 10.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.4
Pig sample Sample description nTPM
Midbrain
nTPM: 9.6
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.4
Sample A Female 10.4
Sample B Female 10.8
Sample C Male 8.6
Sample D Male 8.4
Periaqueductal gray
nTPM: 10.4
Samples: 3

Max nTPM: 11.2
Min nTPM: 10.0
Sample B Female 11.2
Sample C Male 10.0
Sample D Male 10.1
Substantia nigra
nTPM: 10.3
Samples: 4

Max nTPM: 12.6
Min nTPM: 9.5
Sample A Female 9.5
Sample B Female 9.5
Sample C Male 9.7
Sample D Male 12.6
Superior colliculi
nTPM: 8.0
Samples: 4

Max nTPM: 9.2
Min nTPM: 6.6
Sample A Female 7.9
Sample B Female 6.6
Sample C Male 8.2
Sample D Male 9.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.9
Samples: 4

Max nTPM: 21.3
Min nTPM: 13.5
Sample A Male 14.8
Sample B Male 14.0
Sample C Female 13.5
Sample D Female 21.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73497732 Antisense, RP_051121_01_E11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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