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SMIM27
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.3 nTPM
HPA:23.3 nTPM
GTEx:28.0 nTPM
FANTOM5:39.6 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 23.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 23.0
1857 Female, age 85, left hemisphere 24.3
2846 Female, age 79, unknown 23.8
2289 Male, age 61, right hemisphere 23.5
1781 Male, age 74, unknown 22.9
2288 Male, age 75, left hemisphere 22.8
1854 Male, age 80, left hemisphere 22.6
2290 Female, age 72, unknown 22.5
2481 Female, age 94, left hemisphere 21.8
Claustrum
nTPM: 22.7
2491 Male, age 75, both hemispheres 23.3
1956 Male, age 74, unknown 23.1
2196 Female, age 79, unknown 23.1
2568 Male, age 61, both hemispheres 23.1
2392 Female, age 94, both hemispheres 23.0
2284 Female, age 91, both hemispheres 22.6
2292 Female, age 85, both hemispheres 22.6
2645 Female, age 72, unknown 22.1
2198 Male, age 80, both hemispheres 21.7
Globus pallidus, externus
nTPM: 23.3
2567 Female, age 72, unknown 24.3
1996 Male, age 80, right hemisphere 23.8
2772 Female, age 79, unknown 23.4
2646 Male, age 61, right hemisphere 22.6
2395 Male, age 75, both hemispheres 22.5
Globus pallidus, internus
nTPM: 23.3
2778 Female, age 91, both hemispheres 25.5
2566 Female, age 72, unknown 24.3
2037 Male, age 80, right hemisphere 23.4
2111 Female, age 85, right hemisphere 23.4
2287 Male, age 75, right hemisphere 23.2
2483 Female, age 94, right hemisphere 22.0
1818 Male, age 74, unknown 21.6
Nucleus accumbens
nTPM: 23.2
2824 Male, age 61, right hemisphere 24.4
1783 Male, age 74, unknown 24.0
1806 Female, age 85, left hemisphere 23.4
2391 Female, age 94, left hemisphere 23.4
2286 Male, age 75, left hemisphere 23.2
2732 Male, age 80, right hemisphere 22.9
2698 Female, age 72, unknown 22.8
1856 Female, age 91, right hemisphere 21.8
Nucleus basalis of Meynert
nTPM: 22.3
2821 Male, age 75, both hemispheres 22.8
2393 Male, age 80, right hemisphere 22.5
2484 Female, age 94, left hemisphere 21.9
2569 Male, age 61, both hemispheres 21.9
Nucleus of the diagonal band
nTPM: 22.7
1979 Male, age 74, unknown 25.2
2775 Male, age 80, right hemisphere 22.7
2029 Male, age 61, right hemisphere 22.2
1812 Female, age 91, both hemispheres 21.8
2195 Female, age 85, both hemispheres 21.8
Olfactory tubercle
nTPM: 21.7
2487 Female, age 94, left hemisphere 23.0
2856 Male, age 75, right hemisphere 21.6
1998 Female, age 91, both hemispheres 21.5
1846 Male, age 80, right hemisphere 20.9
Putamen
nTPM: 22.8
1838 Male, age 80, right hemisphere 24.0
2466 Female, age 79, unknown 23.9
1937 Female, age 91, right hemisphere 23.3
2489 Female, age 72, unknown 22.9
2482 Female, age 94, left hemisphere 22.1
1829 Male, age 74, unknown 21.6
2647 Male, age 75, left hemisphere 21.6
Septal nuclei
nTPM: 22.7
1960 Male, age 74, unknown 23.9
2059 Female, age 85, both hemispheres 23.4
2199 Male, age 80, right hemisphere 22.8
2629 Female, age 94, right hemisphere 22.6
2009 Female, age 91, both hemispheres 22.3
2394 Male, age 61, left hemisphere 22.3
2031 Female, age 72, unknown 21.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.4
Samples: 246

Max nTPM: 69.3
Min nTPM: 4.7
Std nTPM: 8.3
Median nTPM: 23.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 69.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 56.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 52.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 52.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 51.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 47.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 43.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 43.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 42.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 40.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 39.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.0
Samples: 246

Max nTPM: 104.1
Min nTPM: 13.7
Std nTPM: 10.3
Median nTPM: 26.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 104.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 99.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 66.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 54.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 53.8
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 47.9
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 47.3
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 45.9
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 45.1
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 45.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 43.3
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Brain - Putamen (basal ganglia)
Average nTPM: 27.5
Samples: 205

Max nTPM: 70.4
Min nTPM: 8.8
Std nTPM: 8.0
Median nTPM: 26.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 70.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 58.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 57.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 54.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 51.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 48.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 44.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 43.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 42.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 42.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 40.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.5
FF:10164-103B2 76 years, female 22.5
Globus pallidus
Scaled Tags Per Million: 39.6
FF:10175-103C4 60 years, female 57.6
FF:10161-103A8 76 years, female 21.6
Nucleus accumbens
Scaled Tags Per Million: 13.8
FF:10037-101F1 23-56 years, mixed 13.8
Putamen
Scaled Tags Per Million: 25.7
FF:10176-103C5 60 years, female 25.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.