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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:130.0 nTPM
HPA:130.0 nTPM
GTEx:66.7 nTPM
FANTOM5:9.5 Scaled Tags Per Million
Pig:29.6 nTPM
Mouse:116.2 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 130.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.8
1827 Male, age 72, unknown 114.9
2666 Male, age 74, left hemisphere 113.5
2586 Male, age 75, left hemisphere 112.9
2828 Female, age 72, unknown 111.0
2219 Male, age 76, both hemispheres 108.2
1870 Female, age 42, unknown 104.2
2019 Male, age 18, unknown 103.7
2411 Female, age 72, unknown 102.6
1833 Male, age 53, unknown 100.1
1830 Male, age 51, unknown 97.3
Dorsal raphe nucleus
nTPM: 101.7
2298 Female, age 72, unknown 108.5
2750 Male, age 76, both hemispheres 104.8
2047 Male, age 72, unknown 101.8
1828 Male, age 53, unknown 98.4
2016 Female, age 72, unknown 95.1
Inferior colliculus
nTPM: 113.2
2097 Female, age 72, unknown 123.2
1848 Female, age 42, unknown 110.7
1890 Male, age 53, unknown 109.8
2849 Male, age 72, unknown 109.3
Median raphe nucleus
nTPM: 112.5
2220 Male, age 76, midline 112.5
Pedunculopontine tegmental nucleus
nTPM: 105.2
1921 Female, age 85, both hemispheres 119.0
2334 Male, age 80, both hemispheres 104.5
2338 Male, age 61, both hemispheres 92.1
Periaquaductal grey, anterior
nTPM: 130.0
2502 Female, age 75, unknown 152.4
1795 Male, age 51, unknown 122.7
1947 Male, age 18, unknown 114.9
Periaquaductal grey, dorsal
nTPM: 108.2
1840 Male, age 53, unknown 117.1
2464 Female, age 72, unknown 107.0
1831 Male, age 72, unknown 106.3
2850 Male, age 76, both hemispheres 102.4
Periaquaductal grey, lateral
nTPM: 101.9
2053 Male, age 18, unknown 110.5
2140 Male, age 76, both hemispheres 103.3
2272 Male, age 74, both hemispheres 92.0
Pretectal area
nTPM: 115.6
1816 Male, age 51, unknown 140.0
1944 Female, age 72, unknown 128.3
1817 Female, age 42, unknown 124.2
2007 Male, age 72, unknown 122.9
2667 Female, age 75, unknown 122.2
1815 Male, age 53, unknown 118.4
2825 Male, age 18, unknown 111.2
2224 Female, age 72, unknown 110.5
2316 Male, age 76, right hemisphere 105.5
2407 Male, age 75, both hemispheres 96.1
2273 Male, age 74, both hemispheres 91.9
Red nucleus
nTPM: 99.8
2584 Male, age 75, left hemisphere 106.0
2785 Male, age 18, unknown 105.3
2588 Male, age 74, left hemisphere 104.5
1821 Female, age 72, unknown 101.4
1954 Female, age 42, unknown 100.9
2769 Male, age 72, unknown 100.2
2227 Male, age 72, unknown 99.5
2503 Female, age 72, unknown 99.5
2823 Male, age 76, right hemisphere 96.3
1904 Male, age 53, unknown 95.8
1865 Male, age 51, unknown 94.3
2725 Female, age 75, unknown 93.8
Substantia nigra
nTPM: 105.3
1889 Female, age 72, unknown 116.6
2665 Male, age 74, both hemispheres 115.0
1916 Female, age 42, unknown 111.8
1941 Male, age 53, unknown 110.1
1851 Male, age 51, unknown 108.0
2241 Male, age 72, unknown 104.9
2409 Female, age 72, unknown 99.5
2583 Male, age 75, right hemisphere 96.9
2699 Male, age 18, unknown 95.6
2590 Female, age 75, unknown 94.4
Superior colliculus
nTPM: 111.5
2087 Female, age 72, unknown 123.8
2261 Male, age 18, unknown 121.7
1796 Male, age 53, unknown 118.8
1895 Male, age 76, right hemisphere 115.5
2664 Male, age 75, both hemispheres 112.2
2668 Female, age 75, unknown 111.0
1839 Male, age 51, unknown 107.1
2587 Male, age 74, left hemisphere 104.5
1913 Female, age 42, unknown 101.1
1995 Male, age 72, unknown 99.3
Ventral tegmental area
nTPM: 108.3
2218 Male, age 76, both hemispheres 116.2
1942 Male, age 51, unknown 111.4
1915 Female, age 42, unknown 108.1
2410 Female, age 72, unknown 107.8
2223 Female, age 72, unknown 104.1
2021 Male, age 53, unknown 102.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.7
Samples: 139

Max nTPM: 173.4
Min nTPM: 17.1
Std nTPM: 33.6
Median nTPM: 64.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 173.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 166.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 137.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 137.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 136.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 134.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 134.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 131.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 127.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 117.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 115.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.5
FF:10158-103A5 76 years, female 9.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.6
Pig sample Sample description nTPM
Midbrain
nTPM: 29.6
Samples: 4

Max nTPM: 46.9
Min nTPM: 15.2
Sample A Female 15.2
Sample B Female 18.9
Sample C Male 46.9
Sample D Male 37.5
Periaqueductal gray
nTPM: 18.8
Samples: 3

Max nTPM: 23.8
Min nTPM: 16.2
Sample B Female 16.4
Sample C Male 23.8
Sample D Male 16.2
Substantia nigra
nTPM: 23.5
Samples: 4

Max nTPM: 36.0
Min nTPM: 7.7
Sample A Female 33.2
Sample B Female 17.2
Sample C Male 36.0
Sample D Male 7.7
Superior colliculi
nTPM: 27.5
Samples: 4

Max nTPM: 32.5
Min nTPM: 17.3
Sample A Female 32.5
Sample B Female 17.3
Sample C Male 30.3
Sample D Male 30.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 116.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 116.2
Samples: 4

Max nTPM: 123.7
Min nTPM: 110.3
Sample A Male 118.7
Sample B Male 110.3
Sample C Female 112.1
Sample D Female 123.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
69782963 Antisense, RP_050505_04_B02, Mouse strain C57BL/6J (56 days, male) 6.2

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The Human Protein Atlas project is funded
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