ABOUTMENU
HELP
NEWS
TRNP1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.6 nTPM
HPA:20.6 nTPM
GTEx:19.2 nTPM
FANTOM5:27.8 Scaled Tags Per Million
Pig:20.3 nTPM
Mouse:179.6 nTPM
Allen mouse:9.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.8
2288 Male, age 75, left hemisphere 17.2
1781 Male, age 74, unknown 16.8
2846 Female, age 79, unknown 11.5
2289 Male, age 61, right hemisphere 11.2
2290 Female, age 72, unknown 11.1
1857 Female, age 85, left hemisphere 10.1
1854 Male, age 80, left hemisphere 8.4
2481 Female, age 94, left hemisphere 8.1
Claustrum
nTPM: 12.8
2284 Female, age 91, both hemispheres 21.0
2491 Male, age 75, both hemispheres 17.7
2568 Male, age 61, both hemispheres 15.9
2198 Male, age 80, both hemispheres 14.4
2645 Female, age 72, unknown 11.9
1956 Male, age 74, unknown 9.3
2392 Female, age 94, both hemispheres 9.0
2292 Female, age 85, both hemispheres 8.5
2196 Female, age 79, unknown 7.5
Globus pallidus, externus
nTPM: 8.9
2772 Female, age 79, unknown 16.8
2567 Female, age 72, unknown 8.7
1996 Male, age 80, right hemisphere 6.6
2395 Male, age 75, both hemispheres 6.6
2646 Male, age 61, right hemisphere 6.0
Globus pallidus, internus
nTPM: 6.9
1818 Male, age 74, unknown 13.1
2566 Female, age 72, unknown 9.4
2037 Male, age 80, right hemisphere 8.6
2483 Female, age 94, right hemisphere 6.9
2287 Male, age 75, right hemisphere 3.7
2111 Female, age 85, right hemisphere 3.4
2778 Female, age 91, both hemispheres 2.9
Nucleus accumbens
nTPM: 9.3
1856 Female, age 91, right hemisphere 14.0
1783 Male, age 74, unknown 11.4
2286 Male, age 75, left hemisphere 11.1
2824 Male, age 61, right hemisphere 10.1
1806 Female, age 85, left hemisphere 9.4
2698 Female, age 72, unknown 7.8
2732 Male, age 80, right hemisphere 5.6
2391 Female, age 94, left hemisphere 4.9
Nucleus basalis of Meynert
nTPM: 10.6
2484 Female, age 94, left hemisphere 13.1
2821 Male, age 75, both hemispheres 12.2
2393 Male, age 80, right hemisphere 9.4
2569 Male, age 61, both hemispheres 7.7
Nucleus of the diagonal band
nTPM: 17.1
2029 Male, age 61, right hemisphere 21.7
2775 Male, age 80, right hemisphere 19.6
1812 Female, age 91, both hemispheres 18.7
2195 Female, age 85, both hemispheres 16.4
1979 Male, age 74, unknown 9.1
Olfactory tubercle
nTPM: 20.6
1998 Female, age 91, both hemispheres 27.0
2487 Female, age 94, left hemisphere 20.1
2856 Male, age 75, right hemisphere 19.9
1846 Male, age 80, right hemisphere 15.3
Putamen
nTPM: 11.9
2647 Male, age 75, left hemisphere 15.0
2466 Female, age 79, unknown 12.8
1838 Male, age 80, right hemisphere 12.3
1937 Female, age 91, right hemisphere 12.3
1829 Male, age 74, unknown 11.7
2489 Female, age 72, unknown 10.3
2482 Female, age 94, left hemisphere 9.1
Septal nuclei
nTPM: 14.7
2031 Female, age 72, unknown 20.5
1960 Male, age 74, unknown 18.0
2009 Female, age 91, both hemispheres 16.2
2629 Female, age 94, right hemisphere 15.5
2059 Female, age 85, both hemispheres 14.8
2394 Male, age 61, left hemisphere 11.3
2199 Male, age 80, right hemisphere 6.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 19.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.9
Samples: 246

Max nTPM: 48.4
Min nTPM: 2.7
Std nTPM: 9.1
Median nTPM: 18.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 48.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 46.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 42.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 41.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 40.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 40.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 39.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 38.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 37.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 36.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 36.7
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 19.0
Samples: 246

Max nTPM: 40.2
Min nTPM: 1.8
Std nTPM: 7.3
Median nTPM: 19.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 40.2
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 38.5
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 35.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 35.3
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 34.9
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 34.1
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 31.9
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 31.7
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 30.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 30.7
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 30.2
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 19.2
Samples: 205

Max nTPM: 52.7
Min nTPM: 3.2
Std nTPM: 9.5
Median nTPM: 18.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 52.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 43.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 42.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 41.0
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 41.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 40.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 39.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 37.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 37.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 36.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 35.8
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 14.3
FF:10164-103B2 76 years, female 14.3
Globus pallidus
Scaled Tags Per Million: 6.0
FF:10175-103C4 60 years, female 7.1
FF:10161-103A8 76 years, female 5.0
Nucleus accumbens
Scaled Tags Per Million: 25.7
FF:10037-101F1 23-56 years, mixed 25.7
Putamen
Scaled Tags Per Million: 27.8
FF:10176-103C5 60 years, female 27.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 20.3
Pig sample Sample description nTPM
Caudate
nTPM: 19.5
Samples: 4

Max nTPM: 25.0
Min nTPM: 12.5
Sample A Female 12.5
Sample B Female 20.7
Sample C Male 25.0
Sample D Male 19.7
Putamen
nTPM: 20.3
Samples: 4

Max nTPM: 30.7
Min nTPM: 10.2
Sample A Female 10.2
Sample B Female 18.6
Sample C Male 30.7
Sample D Male 21.7
Septum
nTPM: 14.6
Samples: 4

Max nTPM: 16.5
Min nTPM: 13.4
Sample A Female 13.4
Sample B Female 16.5
Sample C Male 14.8
Sample D Male 13.5
Ventral pallidum
nTPM: 17.0
Samples: 4

Max nTPM: 22.0
Min nTPM: 13.5
Sample A Female 14.4
Sample B Female 18.2
Sample C Male 22.0
Sample D Male 13.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 179.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 179.6
Samples: 4

Max nTPM: 196.3
Min nTPM: 155.6
Sample A Male 181.4
Sample B Male 196.3
Sample C Female 155.6
Sample D Female 185.2
Septum
nTPM: 60.3
Samples: 4

Max nTPM: 64.5
Min nTPM: 56.3
Sample A Male 58.2
Sample B Male 62.0
Sample C Female 64.5
Sample D Female 56.3
Ventral forebrain
nTPM: 101.4
Samples: 4

Max nTPM: 119.6
Min nTPM: 86.7
Sample A Male 101.9
Sample B Male 86.7
Sample C Female 119.6
Sample D Female 97.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.8
75750496 Antisense, RP_060518_04_H07, Mouse strain C57BL/6J (56 days, male) 11.2
72080175 Antisense, RP_051017_03_D01, Mouse strain C57BL/6J (56 days, male) 8.5
Pallidum
Expression energy: 6.4
75750496 Antisense, RP_060518_04_H07, Mouse strain C57BL/6J (56 days, male) 7.2
72080175 Antisense, RP_051017_03_D01, Mouse strain C57BL/6J (56 days, male) 5.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.