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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.3 nTPM
HPA:61.3 nTPM
GTEx:36.5 nTPM
FANTOM5:82.8 Scaled Tags Per Million
Mouse:22.5 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 61.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 26.4
2481 Female, age 94, left hemisphere 39.7
2290 Female, age 72, unknown 30.6
1857 Female, age 85, left hemisphere 29.8
2289 Male, age 61, right hemisphere 27.1
2288 Male, age 75, left hemisphere 23.6
1854 Male, age 80, left hemisphere 22.1
2846 Female, age 79, unknown 19.4
1781 Male, age 74, unknown 19.0
Claustrum
nTPM: 20.6
2568 Male, age 61, both hemispheres 29.1
2491 Male, age 75, both hemispheres 23.9
2196 Female, age 79, unknown 23.2
2198 Male, age 80, both hemispheres 21.6
2645 Female, age 72, unknown 21.6
2392 Female, age 94, both hemispheres 17.8
2284 Female, age 91, both hemispheres 16.7
2292 Female, age 85, both hemispheres 16.0
1956 Male, age 74, unknown 15.6
Globus pallidus, externus
nTPM: 61.3
2646 Male, age 61, right hemisphere 90.8
1996 Male, age 80, right hemisphere 69.9
2567 Female, age 72, unknown 54.7
2772 Female, age 79, unknown 50.9
2395 Male, age 75, both hemispheres 40.0
Globus pallidus, internus
nTPM: 52.7
2483 Female, age 94, right hemisphere 72.2
2287 Male, age 75, right hemisphere 70.7
2037 Male, age 80, right hemisphere 58.2
1818 Male, age 74, unknown 51.2
2111 Female, age 85, right hemisphere 42.0
2778 Female, age 91, both hemispheres 37.2
2566 Female, age 72, unknown 37.1
Nucleus accumbens
nTPM: 23.5
1806 Female, age 85, left hemisphere 34.0
2732 Male, age 80, right hemisphere 28.8
2698 Female, age 72, unknown 25.8
2286 Male, age 75, left hemisphere 24.8
1783 Male, age 74, unknown 21.3
2824 Male, age 61, right hemisphere 19.9
2391 Female, age 94, left hemisphere 16.7
1856 Female, age 91, right hemisphere 16.5
Nucleus basalis of Meynert
nTPM: 39.4
2569 Male, age 61, both hemispheres 94.1
2484 Female, age 94, left hemisphere 30.2
2821 Male, age 75, both hemispheres 18.5
2393 Male, age 80, right hemisphere 14.8
Nucleus of the diagonal band
nTPM: 20.5
1979 Male, age 74, unknown 30.1
1812 Female, age 91, both hemispheres 21.0
2195 Female, age 85, both hemispheres 20.6
2775 Male, age 80, right hemisphere 16.0
2029 Male, age 61, right hemisphere 14.6
Olfactory tubercle
nTPM: 15.8
2856 Male, age 75, right hemisphere 19.3
1846 Male, age 80, right hemisphere 16.4
1998 Female, age 91, both hemispheres 13.7
2487 Female, age 94, left hemisphere 13.7
Putamen
nTPM: 23.6
2647 Male, age 75, left hemisphere 36.3
2489 Female, age 72, unknown 26.5
1829 Male, age 74, unknown 25.6
2466 Female, age 79, unknown 24.0
2482 Female, age 94, left hemisphere 20.1
1838 Male, age 80, right hemisphere 17.3
1937 Female, age 91, right hemisphere 15.6
Septal nuclei
nTPM: 22.5
2199 Male, age 80, right hemisphere 34.2
2059 Female, age 85, both hemispheres 30.9
2394 Male, age 61, left hemisphere 24.0
2009 Female, age 91, both hemispheres 19.8
1960 Male, age 74, unknown 17.1
2629 Female, age 94, right hemisphere 16.0
2031 Female, age 72, unknown 15.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.8
Samples: 246

Max nTPM: 102.8
Min nTPM: 2.6
Std nTPM: 17.6
Median nTPM: 33.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 102.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 101.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 100.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 98.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 88.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 81.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 81.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 78.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 74.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 71.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 68.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 31.5
Samples: 246

Max nTPM: 97.1
Min nTPM: 0.8
Std nTPM: 16.7
Median nTPM: 28.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 97.1
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 94.2
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 84.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 84.0
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 81.7
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 80.8
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 80.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 79.4
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 69.7
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 68.5
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 66.4
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Brain - Putamen (basal ganglia)
Average nTPM: 36.5
Samples: 205

Max nTPM: 95.1
Min nTPM: 3.8
Std nTPM: 19.7
Median nTPM: 33.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 95.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 89.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 88.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 86.4
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 83.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 81.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 79.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 79.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 77.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 73.4
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 72.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 68.8
FF:10164-103B2 76 years, female 68.8
Globus pallidus
Scaled Tags Per Million: 82.8
FF:10161-103A8 76 years, female 101.7
FF:10175-103C4 60 years, female 63.9
Nucleus accumbens
Scaled Tags Per Million: 74.0
FF:10037-101F1 23-56 years, mixed 74.0
Putamen
Scaled Tags Per Million: 69.6
FF:10176-103C5 60 years, female 69.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 22.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 15.2
Samples: 4

Max nTPM: 17.9
Min nTPM: 13.9
Sample A Male 14.2
Sample B Male 17.9
Sample C Female 13.9
Sample D Female 14.6
Septum
nTPM: 22.5
Samples: 4

Max nTPM: 26.9
Min nTPM: 20.4
Sample A Male 21.4
Sample B Male 26.9
Sample C Female 20.4
Sample D Female 21.2
Ventral forebrain
nTPM: 17.9
Samples: 4

Max nTPM: 18.7
Min nTPM: 16.0
Sample A Male 18.5
Sample B Male 18.4
Sample C Female 18.7
Sample D Female 16.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
71380471 Antisense, RP_050412_01_G04, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.4
71380471 Antisense, RP_050412_01_G04, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.