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LSM14A
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.1 nTPM
HPA:27.1 nTPM
GTEx:39.0 nTPM
FANTOM5:126.1 Scaled Tags Per Million
Pig:48.9 nTPM
Mouse:53.9 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.8
2411 Female, age 72, unknown 27.5
2019 Male, age 18, unknown 26.6
1827 Male, age 72, unknown 25.8
1830 Male, age 51, unknown 25.3
1833 Male, age 53, unknown 25.3
1870 Female, age 42, unknown 24.8
2219 Male, age 76, both hemispheres 24.2
2828 Female, age 72, unknown 23.9
2586 Male, age 75, left hemisphere 22.8
2666 Male, age 74, left hemisphere 22.1
Dorsal raphe nucleus
nTPM: 25.6
2016 Female, age 72, unknown 27.3
1828 Male, age 53, unknown 25.5
2047 Male, age 72, unknown 25.3
2750 Male, age 76, both hemispheres 25.1
2298 Female, age 72, unknown 24.6
Inferior colliculus
nTPM: 25.1
2097 Female, age 72, unknown 27.0
1848 Female, age 42, unknown 26.2
1890 Male, age 53, unknown 24.3
2849 Male, age 72, unknown 22.9
Median raphe nucleus
nTPM: 25.8
2220 Male, age 76, midline 25.8
Pedunculopontine tegmental nucleus
nTPM: 25.2
1921 Female, age 85, both hemispheres 26.1
2334 Male, age 80, both hemispheres 25.3
2338 Male, age 61, both hemispheres 24.2
Periaquaductal grey, anterior
nTPM: 26.7
2502 Female, age 75, unknown 30.0
1947 Male, age 18, unknown 25.8
1795 Male, age 51, unknown 24.2
Periaquaductal grey, dorsal
nTPM: 26.6
2464 Female, age 72, unknown 28.6
1840 Male, age 53, unknown 26.6
2850 Male, age 76, both hemispheres 25.8
1831 Male, age 72, unknown 25.5
Periaquaductal grey, lateral
nTPM: 27.1
2053 Male, age 18, unknown 28.4
2272 Male, age 74, both hemispheres 27.1
2140 Male, age 76, both hemispheres 25.8
Pretectal area
nTPM: 25.4
2273 Male, age 74, both hemispheres 27.0
2316 Male, age 76, right hemisphere 26.7
2224 Female, age 72, unknown 26.1
1944 Female, age 72, unknown 25.8
1815 Male, age 53, unknown 25.6
1817 Female, age 42, unknown 25.4
2007 Male, age 72, unknown 24.9
2407 Male, age 75, both hemispheres 24.8
2667 Female, age 75, unknown 24.6
1816 Male, age 51, unknown 24.5
2825 Male, age 18, unknown 23.7
Red nucleus
nTPM: 25.3
2823 Male, age 76, right hemisphere 26.7
2588 Male, age 74, left hemisphere 26.6
1821 Female, age 72, unknown 26.5
2785 Male, age 18, unknown 26.2
1954 Female, age 42, unknown 26.1
2769 Male, age 72, unknown 26.0
1904 Male, age 53, unknown 25.5
1865 Male, age 51, unknown 24.9
2227 Male, age 72, unknown 24.3
2503 Female, age 72, unknown 23.8
2584 Male, age 75, left hemisphere 23.6
2725 Female, age 75, unknown 23.5
Substantia nigra
nTPM: 23.6
1851 Male, age 51, unknown 24.9
2241 Male, age 72, unknown 24.6
1889 Female, age 72, unknown 24.3
1916 Female, age 42, unknown 23.9
2665 Male, age 74, both hemispheres 23.7
1941 Male, age 53, unknown 23.6
2583 Male, age 75, right hemisphere 23.3
2590 Female, age 75, unknown 23.0
2699 Male, age 18, unknown 22.8
2409 Female, age 72, unknown 21.7
Superior colliculus
nTPM: 25.5
1995 Male, age 72, unknown 27.3
2668 Female, age 75, unknown 26.7
2664 Male, age 75, both hemispheres 26.4
1913 Female, age 42, unknown 25.8
1839 Male, age 51, unknown 25.6
1796 Male, age 53, unknown 25.4
2261 Male, age 18, unknown 25.0
2087 Female, age 72, unknown 24.9
1895 Male, age 76, right hemisphere 24.3
2587 Male, age 74, left hemisphere 24.0
Ventral tegmental area
nTPM: 25.7
2410 Female, age 72, unknown 28.6
1942 Male, age 51, unknown 26.1
2223 Female, age 72, unknown 25.5
2218 Male, age 76, both hemispheres 25.2
2021 Male, age 53, unknown 24.6
1915 Female, age 42, unknown 24.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.0
Samples: 139

Max nTPM: 63.1
Min nTPM: 22.6
Std nTPM: 7.9
Median nTPM: 38.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 63.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 59.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 56.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 56.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 55.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 54.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 52.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 51.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 50.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 50.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 50.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.1
FF:10158-103A5 76 years, female 126.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.9
Pig sample Sample description nTPM
Midbrain
nTPM: 48.9
Samples: 4

Max nTPM: 67.9
Min nTPM: 39.5
Sample A Female 67.9
Sample B Female 47.1
Sample C Male 39.5
Sample D Male 41.1
Periaqueductal gray
nTPM: 43.8
Samples: 3

Max nTPM: 44.5
Min nTPM: 42.9
Sample B Female 42.9
Sample C Male 44.0
Sample D Male 44.5
Substantia nigra
nTPM: 45.3
Samples: 4

Max nTPM: 48.6
Min nTPM: 42.2
Sample A Female 48.2
Sample B Female 42.2
Sample C Male 42.3
Sample D Male 48.6
Superior colliculi
nTPM: 44.6
Samples: 4

Max nTPM: 48.0
Min nTPM: 39.9
Sample A Female 48.0
Sample B Female 39.9
Sample C Male 44.1
Sample D Male 46.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.9
Samples: 4

Max nTPM: 55.6
Min nTPM: 52.4
Sample A Male 54.4
Sample B Male 53.1
Sample C Female 55.6
Sample D Female 52.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
68546374 Antisense, RP_050120_02_D05, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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