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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:132.7 nTPM
HPA:132.7 nTPM
GTEx:222.4 nTPM
FANTOM5:9.7 Scaled Tags Per Million
Pig:259.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 132.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.6
2219 Male, age 76, both hemispheres 114.5
2019 Male, age 18, unknown 110.1
2586 Male, age 75, left hemisphere 106.9
1827 Male, age 72, unknown 103.3
2828 Female, age 72, unknown 97.7
2411 Female, age 72, unknown 96.5
1870 Female, age 42, unknown 63.9
2666 Male, age 74, left hemisphere 60.1
1833 Male, age 53, unknown 46.8
1830 Male, age 51, unknown 46.5
Dorsal raphe nucleus
nTPM: 104.4
2298 Female, age 72, unknown 162.7
2047 Male, age 72, unknown 112.9
1828 Male, age 53, unknown 100.2
2750 Male, age 76, both hemispheres 98.9
2016 Female, age 72, unknown 47.4
Inferior colliculus
nTPM: 47.4
2097 Female, age 72, unknown 65.5
1848 Female, age 42, unknown 45.8
1890 Male, age 53, unknown 40.6
2849 Male, age 72, unknown 37.6
Median raphe nucleus
nTPM: 132.7
2220 Male, age 76, midline 132.7
Pedunculopontine tegmental nucleus
nTPM: 115.2
2334 Male, age 80, both hemispheres 136.3
1921 Female, age 85, both hemispheres 112.3
2338 Male, age 61, both hemispheres 97.1
Periaquaductal grey, anterior
nTPM: 102.6
1795 Male, age 51, unknown 134.2
1947 Male, age 18, unknown 93.8
2502 Female, age 75, unknown 79.7
Periaquaductal grey, dorsal
nTPM: 57.9
2850 Male, age 76, both hemispheres 65.1
1831 Male, age 72, unknown 62.5
1840 Male, age 53, unknown 54.1
2464 Female, age 72, unknown 49.7
Periaquaductal grey, lateral
nTPM: 63.1
2272 Male, age 74, both hemispheres 84.9
2140 Male, age 76, both hemispheres 55.0
2053 Male, age 18, unknown 49.3
Pretectal area
nTPM: 120.7
2667 Female, age 75, unknown 198.9
1944 Female, age 72, unknown 179.3
1816 Male, age 51, unknown 178.7
2007 Male, age 72, unknown 160.9
1817 Female, age 42, unknown 148.7
2224 Female, age 72, unknown 116.1
1815 Male, age 53, unknown 114.7
2825 Male, age 18, unknown 64.7
2273 Male, age 74, both hemispheres 63.8
2407 Male, age 75, both hemispheres 58.7
2316 Male, age 76, right hemisphere 42.6
Red nucleus
nTPM: 65.3
2785 Male, age 18, unknown 102.6
1954 Female, age 42, unknown 87.9
1821 Female, age 72, unknown 83.6
2725 Female, age 75, unknown 67.9
2503 Female, age 72, unknown 65.7
1904 Male, age 53, unknown 62.9
2227 Male, age 72, unknown 59.9
2769 Male, age 72, unknown 59.1
1865 Male, age 51, unknown 58.1
2584 Male, age 75, left hemisphere 49.3
2588 Male, age 74, left hemisphere 44.6
2823 Male, age 76, right hemisphere 42.1
Substantia nigra
nTPM: 120.2
1916 Female, age 42, unknown 222.2
1941 Male, age 53, unknown 161.2
2665 Male, age 74, both hemispheres 148.1
1851 Male, age 51, unknown 141.4
1889 Female, age 72, unknown 140.7
2409 Female, age 72, unknown 101.8
2241 Male, age 72, unknown 94.1
2699 Male, age 18, unknown 80.0
2590 Female, age 75, unknown 66.2
2583 Male, age 75, right hemisphere 46.7
Superior colliculus
nTPM: 74.6
2087 Female, age 72, unknown 159.2
1796 Male, age 53, unknown 105.2
2261 Male, age 18, unknown 95.9
2668 Female, age 75, unknown 72.0
2664 Male, age 75, both hemispheres 63.3
1913 Female, age 42, unknown 62.9
1839 Male, age 51, unknown 53.0
1895 Male, age 76, right hemisphere 45.3
1995 Male, age 72, unknown 44.9
2587 Male, age 74, left hemisphere 44.2
Ventral tegmental area
nTPM: 118.4
2410 Female, age 72, unknown 165.9
2218 Male, age 76, both hemispheres 153.7
1915 Female, age 42, unknown 147.6
2021 Male, age 53, unknown 93.1
1942 Male, age 51, unknown 90.9
2223 Female, age 72, unknown 59.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 222.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 222.4
Samples: 139

Max nTPM: 853.8
Min nTPM: 9.9
Std nTPM: 185.4
Median nTPM: 168.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 853.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 776.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 746.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 677.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 614.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 606.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 572.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 528.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 525.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 523.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 514.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.7
FF:10158-103A5 76 years, female 9.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 259.5
Pig sample Sample description nTPM
Midbrain
nTPM: 189.1
Samples: 4

Max nTPM: 363.0
Min nTPM: 57.0
Sample A Female 57.0
Sample B Female 155.8
Sample C Male 363.0
Sample D Male 180.4
Periaqueductal gray
nTPM: 138.4
Samples: 3

Max nTPM: 186.8
Min nTPM: 106.4
Sample B Female 122.1
Sample C Male 186.8
Sample D Male 106.4
Substantia nigra
nTPM: 259.5
Samples: 4

Max nTPM: 516.7
Min nTPM: 44.9
Sample A Female 516.7
Sample B Female 166.6
Sample C Male 309.9
Sample D Male 44.9
Superior colliculi
nTPM: 186.0
Samples: 4

Max nTPM: 284.9
Min nTPM: 96.3
Sample A Female 206.0
Sample B Female 96.3
Sample C Male 284.9
Sample D Male 156.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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