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NCBP2AS2
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.3 nTPM
HPA:32.3 nTPM
GTEx:33.1 nTPM
FANTOM5:32.0 Scaled Tags Per Million
Mouse:27.6 nTPM
Allen mouse:2.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 32.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 31.5
2481 Female, age 94, left hemisphere 35.1
2290 Female, age 72, unknown 33.5
2288 Male, age 75, left hemisphere 33.1
2846 Female, age 79, unknown 31.8
1781 Male, age 74, unknown 31.5
1857 Female, age 85, left hemisphere 29.8
2289 Male, age 61, right hemisphere 29.2
1854 Male, age 80, left hemisphere 28.5
Claustrum
nTPM: 30.2
2198 Male, age 80, both hemispheres 32.5
2491 Male, age 75, both hemispheres 31.8
2284 Female, age 91, both hemispheres 31.0
2196 Female, age 79, unknown 29.9
2292 Female, age 85, both hemispheres 29.8
1956 Male, age 74, unknown 29.6
2392 Female, age 94, both hemispheres 29.2
2568 Male, age 61, both hemispheres 29.2
2645 Female, age 72, unknown 28.4
Globus pallidus, externus
nTPM: 29.0
2772 Female, age 79, unknown 33.1
2395 Male, age 75, both hemispheres 29.7
1996 Male, age 80, right hemisphere 29.2
2646 Male, age 61, right hemisphere 26.6
2567 Female, age 72, unknown 26.4
Globus pallidus, internus
nTPM: 30.1
2287 Male, age 75, right hemisphere 35.1
2483 Female, age 94, right hemisphere 34.5
2778 Female, age 91, both hemispheres 30.0
1818 Male, age 74, unknown 28.1
2037 Male, age 80, right hemisphere 28.1
2111 Female, age 85, right hemisphere 27.3
2566 Female, age 72, unknown 27.3
Nucleus accumbens
nTPM: 31.4
1856 Female, age 91, right hemisphere 33.7
2286 Male, age 75, left hemisphere 33.4
1783 Male, age 74, unknown 33.1
1806 Female, age 85, left hemisphere 31.9
2698 Female, age 72, unknown 31.2
2824 Male, age 61, right hemisphere 30.9
2391 Female, age 94, left hemisphere 28.4
2732 Male, age 80, right hemisphere 28.4
Nucleus basalis of Meynert
nTPM: 28.6
2484 Female, age 94, left hemisphere 31.5
2821 Male, age 75, both hemispheres 27.9
2393 Male, age 80, right hemisphere 27.7
2569 Male, age 61, both hemispheres 27.1
Nucleus of the diagonal band
nTPM: 32.3
2195 Female, age 85, both hemispheres 33.7
2775 Male, age 80, right hemisphere 33.2
1979 Male, age 74, unknown 32.2
1812 Female, age 91, both hemispheres 31.9
2029 Male, age 61, right hemisphere 30.6
Olfactory tubercle
nTPM: 32.1
1998 Female, age 91, both hemispheres 33.9
2487 Female, age 94, left hemisphere 32.0
1846 Male, age 80, right hemisphere 31.9
2856 Male, age 75, right hemisphere 30.6
Putamen
nTPM: 30.8
2466 Female, age 79, unknown 34.0
2482 Female, age 94, left hemisphere 31.6
1838 Male, age 80, right hemisphere 31.2
1937 Female, age 91, right hemisphere 31.0
1829 Male, age 74, unknown 30.1
2647 Male, age 75, left hemisphere 29.2
2489 Female, age 72, unknown 28.1
Septal nuclei
nTPM: 31.0
1960 Male, age 74, unknown 36.3
2031 Female, age 72, unknown 35.6
2059 Female, age 85, both hemispheres 30.9
2009 Female, age 91, both hemispheres 30.2
2629 Female, age 94, right hemisphere 28.8
2394 Male, age 61, left hemisphere 28.2
2199 Male, age 80, right hemisphere 27.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 33.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.9
Samples: 246

Max nTPM: 73.7
Min nTPM: 13.1
Std nTPM: 10.1
Median nTPM: 27.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 73.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 65.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 62.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 60.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 59.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 57.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 57.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 55.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 54.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 54.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 53.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.1
Samples: 246

Max nTPM: 60.5
Min nTPM: 12.7
Std nTPM: 9.5
Median nTPM: 32.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 60.5
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 60.0
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 56.3
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 55.6
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 55.3
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 55.3
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 55.0
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 53.8
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 53.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 53.1
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 52.5
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Brain - Putamen (basal ganglia)
Average nTPM: 31.8
Samples: 205

Max nTPM: 65.1
Min nTPM: 12.9
Std nTPM: 9.3
Median nTPM: 29.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 65.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 58.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 55.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 54.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 52.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 52.3
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 51.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 50.6
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 50.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 49.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 48.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.5
FF:10164-103B2 76 years, female 25.5
Globus pallidus
Scaled Tags Per Million: 16.1
FF:10161-103A8 76 years, female 18.0
FF:10175-103C4 60 years, female 14.2
Nucleus accumbens
Scaled Tags Per Million: 27.0
FF:10037-101F1 23-56 years, mixed 27.0
Putamen
Scaled Tags Per Million: 32.0
FF:10176-103C5 60 years, female 32.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 27.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 26.1
Samples: 4

Max nTPM: 29.3
Min nTPM: 23.7
Sample A Male 29.3
Sample B Male 26.5
Sample C Female 24.9
Sample D Female 23.7
Septum
nTPM: 24.1
Samples: 4

Max nTPM: 26.8
Min nTPM: 20.8
Sample A Male 23.1
Sample B Male 25.6
Sample C Female 26.8
Sample D Female 20.8
Ventral forebrain
nTPM: 27.6
Samples: 4

Max nTPM: 32.0
Min nTPM: 24.0
Sample A Male 28.6
Sample B Male 24.0
Sample C Female 32.0
Sample D Female 25.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.6
70429100 Antisense, RP_050614_01_A01, Mouse strain C57BL/6J (56 days, male) 2.6
Pallidum
Expression energy: 2.1
70429100 Antisense, RP_050614_01_A01, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.