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NCBP2AS2
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.7 nTPM
HPA:31.7 nTPM
GTEx:29.7 nTPM
FANTOM5:21.9 Scaled Tags Per Million
Mouse:26.6 nTPM
Allen mouse:5.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 31.7
Sample id Sample description nTPM
Hippocampus
nTPM: 30.1
1898 Male, age 80, left hemisphere 32.8
2529 Female, age 94, left hemisphere 31.2
2621 Female, age 67, right hemisphere 30.0
1911 Female, age 85, right hemisphere 29.5
1855 Male, age 76, left hemisphere 28.9
2148 Female, age 91, left hemisphere 28.5
Dentate gyrus
nTPM: 31.4
2530 Female, age 94, left hemisphere 33.1
2528 Male, age 74, both hemispheres 32.1
1927 Female, age 91, both hemispheres 32.0
2010 Male, age 76, both hemispheres 31.3
2531 Female, age 67, both hemispheres 30.2
2246 Female, age 85, both hemispheres 29.8
Entorhinal gyrus
nTPM: 30.6
2764 Male, age 80, right hemisphere 34.2
1787 Male, age 76, left hemisphere 31.8
1938 Female, age 85, left hemisphere 30.7
2613 Female, age 94, left hemisphere 30.4
2117 Female, age 91, right hemisphere 28.8
2686 Male, age 75, right hemisphere 27.9
Hippocampus, CA1
nTPM: 31.4
2749 Male, age 80, left hemisphere 38.8
2527 Male, age 74, both hemispheres 31.3
2045 Male, age 76, both hemispheres 30.6
1873 Female, age 85, both hemispheres 30.2
2082 Female, age 91, right hemisphere 26.3
Hippocampus, CA2
nTPM: 30.9
1892 Male, age 76, both hemispheres 33.8
1963 Male, age 80, left hemisphere 32.5
2249 Male, age 74, both hemispheres 32.2
1940 Female, age 85, left hemisphere 29.1
2437 Female, age 94, left hemisphere 29.1
2113 Female, age 91, right hemisphere 29.0
Hippocampus, CA3
nTPM: 31.7
2137 Male, age 80, left hemisphere 34.6
2620 Female, age 94, left hemisphere 33.4
1867 Male, age 76, both hemispheres 32.1
2436 Male, age 74, both hemispheres 30.9
2861 Female, age 67, both hemispheres 30.5
1891 Female, age 85, both hemispheres 28.9
Parahippocampal cortex
nTPM: 29.5
2250 Female, age 67, right hemisphere 31.6
2245 Female, age 91, both hemispheres 31.4
1850 Male, age 80, both hemispheres 30.7
1990 Female, age 91, right hemisphere 30.6
2532 Female, age 72, left hemisphere 30.6
1933 Female, age 85, both hemispheres 29.7
2018 Male, age 76, both hemispheres 28.2
2692 Male, age 74, both hemispheres 28.0
2622 Female, age 67, right hemisphere 27.9
2693 Female, age 94, both hemispheres 26.5
Perirhinal gyrus
nTPM: 30.9
1847 Female, age 91, left hemisphere 33.1
1794 Male, age 80, right hemisphere 32.3
1841 Female, age 85, right hemisphere 31.2
2848 Male, age 76, right hemisphere 29.5
2521 Female, age 94, right hemisphere 28.6
Subiculum
nTPM: 28.9
1977 Female, age 85, both hemispheres 33.0
2619 Male, age 74, both hemispheres 30.1
1901 Male, age 80, both hemispheres 29.4
2729 Female, age 91, right hemisphere 27.9
2042 Male, age 76, both hemispheres 27.5
2438 Female, age 94, left hemisphere 25.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 29.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.7
Samples: 197

Max nTPM: 69.1
Min nTPM: 9.2
Std nTPM: 11.3
Median nTPM: 27.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 69.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 65.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 65.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 65.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 61.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 56.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 55.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 55.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 55.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 51.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 48.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 21.9
FF:10169-103B7 60 years, female 24.0
FF:10153-102I9 76 years, female 19.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 26.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.6
Samples: 4

Max nTPM: 29.7
Min nTPM: 22.9
Sample A Male 22.9
Sample B Male 27.6
Sample C Female 29.7
Sample D Female 26.0
Hippocampal formation
nTPM: 26.1
Samples: 4

Max nTPM: 27.7
Min nTPM: 23.9
Sample A Male 27.7
Sample B Male 25.2
Sample C Female 23.9
Sample D Female 27.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.4
70429100 Antisense, RP_050614_01_A01, Mouse strain C57BL/6J (56 days, male) 5.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.