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F8A1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.1 nTPM
HPA:30.1 nTPM
GTEx:31.2 nTPM
FANTOM5:0.0 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 30.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.2
2289 Male, age 61, right hemisphere 35.4
2846 Female, age 79, unknown 30.2
2288 Male, age 75, left hemisphere 30.0
1857 Female, age 85, left hemisphere 29.8
2290 Female, age 72, unknown 28.5
1854 Male, age 80, left hemisphere 28.4
1781 Male, age 74, unknown 26.0
2481 Female, age 94, left hemisphere 25.7
Claustrum
nTPM: 28.1
2568 Male, age 61, both hemispheres 31.7
2284 Female, age 91, both hemispheres 31.0
2198 Male, age 80, both hemispheres 29.8
2491 Male, age 75, both hemispheres 28.7
1956 Male, age 74, unknown 28.0
2645 Female, age 72, unknown 27.2
2292 Female, age 85, both hemispheres 26.2
2196 Female, age 79, unknown 26.1
2392 Female, age 94, both hemispheres 24.4
Globus pallidus, externus
nTPM: 25.0
2772 Female, age 79, unknown 27.0
1996 Male, age 80, right hemisphere 25.5
2395 Male, age 75, both hemispheres 24.9
2567 Female, age 72, unknown 24.3
2646 Male, age 61, right hemisphere 23.1
Globus pallidus, internus
nTPM: 24.6
2566 Female, age 72, unknown 27.0
2778 Female, age 91, both hemispheres 26.1
2287 Male, age 75, right hemisphere 24.7
2483 Female, age 94, right hemisphere 24.4
1818 Male, age 74, unknown 24.3
2037 Male, age 80, right hemisphere 24.3
2111 Female, age 85, right hemisphere 21.4
Nucleus accumbens
nTPM: 27.5
1856 Female, age 91, right hemisphere 31.4
2698 Female, age 72, unknown 29.3
1783 Male, age 74, unknown 28.8
2824 Male, age 61, right hemisphere 28.5
1806 Female, age 85, left hemisphere 28.3
2732 Male, age 80, right hemisphere 26.2
2286 Male, age 75, left hemisphere 25.5
2391 Female, age 94, left hemisphere 21.7
Nucleus basalis of Meynert
nTPM: 27.2
2484 Female, age 94, left hemisphere 31.3
2393 Male, age 80, right hemisphere 26.7
2569 Male, age 61, both hemispheres 25.8
2821 Male, age 75, both hemispheres 25.0
Nucleus of the diagonal band
nTPM: 30.1
2029 Male, age 61, right hemisphere 32.5
2195 Female, age 85, both hemispheres 30.0
1812 Female, age 91, both hemispheres 29.5
1979 Male, age 74, unknown 29.4
2775 Male, age 80, right hemisphere 29.3
Olfactory tubercle
nTPM: 29.7
1998 Female, age 91, both hemispheres 31.8
2487 Female, age 94, left hemisphere 30.9
2856 Male, age 75, right hemisphere 28.2
1846 Male, age 80, right hemisphere 28.0
Putamen
nTPM: 28.0
1838 Male, age 80, right hemisphere 31.8
1937 Female, age 91, right hemisphere 31.5
1829 Male, age 74, unknown 29.7
2466 Female, age 79, unknown 26.4
2482 Female, age 94, left hemisphere 26.4
2647 Male, age 75, left hemisphere 25.3
2489 Female, age 72, unknown 24.6
Septal nuclei
nTPM: 29.5
2031 Female, age 72, unknown 33.5
1960 Male, age 74, unknown 32.1
2059 Female, age 85, both hemispheres 31.9
2629 Female, age 94, right hemisphere 29.8
2009 Female, age 91, both hemispheres 28.9
2394 Male, age 61, left hemisphere 27.1
2199 Male, age 80, right hemisphere 23.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.7
Samples: 246

Max nTPM: 68.1
Min nTPM: 3.8
Std nTPM: 10.9
Median nTPM: 27.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 68.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 67.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 62.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 54.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 52.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 52.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 51.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 51.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 48.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 47.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 47.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.8
Samples: 246

Max nTPM: 59.5
Min nTPM: 4.9
Std nTPM: 11.3
Median nTPM: 28.9
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 59.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 57.9
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 56.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 55.8
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 54.8
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 54.8
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 54.4
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 52.9
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 51.1
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 50.5
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 50.1
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Brain - Putamen (basal ganglia)
Average nTPM: 31.2
Samples: 205

Max nTPM: 66.5
Min nTPM: 7.9
Std nTPM: 12.1
Median nTPM: 30.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 66.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 61.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 58.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 55.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 54.5
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 53.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 53.1
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 52.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 51.6
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 51.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 50.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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