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F8A1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.2 nTPM
HPA:28.2 nTPM
GTEx:22.7 nTPM
FANTOM5:0.0 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.4
2828 Female, age 72, unknown 28.7
2586 Male, age 75, left hemisphere 27.6
1870 Female, age 42, unknown 27.4
1833 Male, age 53, unknown 27.2
1827 Male, age 72, unknown 26.5
1830 Male, age 51, unknown 26.2
2666 Male, age 74, left hemisphere 25.9
2411 Female, age 72, unknown 25.6
2019 Male, age 18, unknown 25.1
2219 Male, age 76, both hemispheres 23.8
Dorsal raphe nucleus
nTPM: 26.3
2750 Male, age 76, both hemispheres 28.5
2047 Male, age 72, unknown 28.0
2298 Female, age 72, unknown 25.4
1828 Male, age 53, unknown 25.2
2016 Female, age 72, unknown 24.5
Inferior colliculus
nTPM: 27.2
2849 Male, age 72, unknown 28.3
2097 Female, age 72, unknown 28.0
1890 Male, age 53, unknown 26.7
1848 Female, age 42, unknown 25.8
Median raphe nucleus
nTPM: 27.6
2220 Male, age 76, midline 27.6
Pedunculopontine tegmental nucleus
nTPM: 25.7
1921 Female, age 85, both hemispheres 26.4
2334 Male, age 80, both hemispheres 26.4
2338 Male, age 61, both hemispheres 24.3
Periaquaductal grey, anterior
nTPM: 28.2
2502 Female, age 75, unknown 28.6
1795 Male, age 51, unknown 28.2
1947 Male, age 18, unknown 27.9
Periaquaductal grey, dorsal
nTPM: 24.7
1840 Male, age 53, unknown 26.9
2850 Male, age 76, both hemispheres 24.3
1831 Male, age 72, unknown 24.2
2464 Female, age 72, unknown 23.6
Periaquaductal grey, lateral
nTPM: 27.3
2272 Male, age 74, both hemispheres 31.8
2053 Male, age 18, unknown 25.3
2140 Male, age 76, both hemispheres 24.9
Pretectal area
nTPM: 28.1
2007 Male, age 72, unknown 32.7
1944 Female, age 72, unknown 31.7
1816 Male, age 51, unknown 31.0
1817 Female, age 42, unknown 29.0
2667 Female, age 75, unknown 27.7
2825 Male, age 18, unknown 26.7
1815 Male, age 53, unknown 26.6
2224 Female, age 72, unknown 26.6
2407 Male, age 75, both hemispheres 26.6
2273 Male, age 74, both hemispheres 26.4
2316 Male, age 76, right hemisphere 23.7
Red nucleus
nTPM: 25.7
2785 Male, age 18, unknown 29.4
2584 Male, age 75, left hemisphere 28.7
2588 Male, age 74, left hemisphere 27.4
2503 Female, age 72, unknown 26.3
2769 Male, age 72, unknown 25.8
2227 Male, age 72, unknown 25.4
1954 Female, age 42, unknown 25.2
2725 Female, age 75, unknown 24.7
1865 Male, age 51, unknown 24.3
1904 Male, age 53, unknown 24.0
1821 Female, age 72, unknown 23.9
2823 Male, age 76, right hemisphere 23.8
Substantia nigra
nTPM: 26.1
1889 Female, age 72, unknown 30.3
1916 Female, age 42, unknown 29.2
1941 Male, age 53, unknown 27.7
2583 Male, age 75, right hemisphere 27.6
2590 Female, age 75, unknown 27.2
2665 Male, age 74, both hemispheres 25.9
2699 Male, age 18, unknown 25.2
1851 Male, age 51, unknown 25.1
2241 Male, age 72, unknown 23.0
2409 Female, age 72, unknown 19.8
Superior colliculus
nTPM: 26.1
2261 Male, age 18, unknown 27.7
2587 Male, age 74, left hemisphere 27.5
2664 Male, age 75, both hemispheres 27.5
1796 Male, age 53, unknown 27.2
1839 Male, age 51, unknown 26.4
1895 Male, age 76, right hemisphere 25.9
2668 Female, age 75, unknown 25.6
2087 Female, age 72, unknown 25.4
1913 Female, age 42, unknown 24.8
1995 Male, age 72, unknown 23.5
Ventral tegmental area
nTPM: 26.6
2218 Male, age 76, both hemispheres 28.1
2410 Female, age 72, unknown 27.6
1915 Female, age 42, unknown 26.9
1942 Male, age 51, unknown 26.2
2223 Female, age 72, unknown 25.7
2021 Male, age 53, unknown 25.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.7
Samples: 139

Max nTPM: 54.4
Min nTPM: 2.6
Std nTPM: 8.8
Median nTPM: 22.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 54.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 48.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 44.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 43.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 38.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 38.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 38.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 37.5
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 37.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 36.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 36.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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