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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:55.5 nTPM
HPA:55.5 nTPM
GTEx:50.9 nTPM
FANTOM5:102.2 Scaled Tags Per Million
Pig:47.5 nTPM
Mouse:155.5 nTPM
Allen mouse:5.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA023189
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 55.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.1
1781 Male, age 74, unknown 38.4
2290 Female, age 72, unknown 21.8
2846 Female, age 79, unknown 20.4
2288 Male, age 75, left hemisphere 20.1
2289 Male, age 61, right hemisphere 17.4
1854 Male, age 80, left hemisphere 15.1
1857 Female, age 85, left hemisphere 13.7
2481 Female, age 94, left hemisphere 6.2
Claustrum
nTPM: 55.5
2284 Female, age 91, both hemispheres 86.0
2198 Male, age 80, both hemispheres 72.6
2568 Male, age 61, both hemispheres 69.9
2645 Female, age 72, unknown 67.2
2491 Male, age 75, both hemispheres 55.5
2392 Female, age 94, both hemispheres 40.1
1956 Male, age 74, unknown 37.5
2292 Female, age 85, both hemispheres 36.5
2196 Female, age 79, unknown 34.2
Globus pallidus, externus
nTPM: 6.2
2646 Male, age 61, right hemisphere 13.5
2567 Female, age 72, unknown 8.1
2772 Female, age 79, unknown 4.8
2395 Male, age 75, both hemispheres 4.5
1996 Male, age 80, right hemisphere 0.0
Globus pallidus, internus
nTPM: 4.9
2483 Female, age 94, right hemisphere 9.8
2566 Female, age 72, unknown 9.0
1818 Male, age 74, unknown 7.5
2287 Male, age 75, right hemisphere 4.8
2778 Female, age 91, both hemispheres 3.3
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
Nucleus accumbens
nTPM: 16.8
1783 Male, age 74, unknown 32.8
1856 Female, age 91, right hemisphere 22.3
2824 Male, age 61, right hemisphere 19.5
2286 Male, age 75, left hemisphere 16.0
1806 Female, age 85, left hemisphere 14.3
2698 Female, age 72, unknown 14.1
2732 Male, age 80, right hemisphere 10.8
2391 Female, age 94, left hemisphere 4.2
Nucleus basalis of Meynert
nTPM: 14.7
2484 Female, age 94, left hemisphere 21.0
2821 Male, age 75, both hemispheres 13.9
2569 Male, age 61, both hemispheres 12.8
2393 Male, age 80, right hemisphere 11.4
Nucleus of the diagonal band
nTPM: 45.2
2029 Male, age 61, right hemisphere 56.5
2775 Male, age 80, right hemisphere 50.6
2195 Female, age 85, both hemispheres 50.1
1812 Female, age 91, both hemispheres 37.4
1979 Male, age 74, unknown 31.1
Olfactory tubercle
nTPM: 48.8
1998 Female, age 91, both hemispheres 57.1
2487 Female, age 94, left hemisphere 57.0
2856 Male, age 75, right hemisphere 43.8
1846 Male, age 80, right hemisphere 37.4
Putamen
nTPM: 21.0
2466 Female, age 79, unknown 29.0
2647 Male, age 75, left hemisphere 26.6
2489 Female, age 72, unknown 23.8
1838 Male, age 80, right hemisphere 19.2
1829 Male, age 74, unknown 18.9
1937 Female, age 91, right hemisphere 18.3
2482 Female, age 94, left hemisphere 11.2
Septal nuclei
nTPM: 36.8
1960 Male, age 74, unknown 58.8
2031 Female, age 72, unknown 46.2
2629 Female, age 94, right hemisphere 40.4
2059 Female, age 85, both hemispheres 37.2
2009 Female, age 91, both hemispheres 36.7
2394 Male, age 61, left hemisphere 23.6
2199 Male, age 80, right hemisphere 14.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 50.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.5
Samples: 246

Max nTPM: 86.0
Min nTPM: 20.3
Std nTPM: 9.4
Median nTPM: 42.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 86.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 76.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 69.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 64.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 63.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 63.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 63.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 62.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 62.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 61.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 60.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 50.9
Samples: 246

Max nTPM: 83.3
Min nTPM: 21.0
Std nTPM: 11.6
Median nTPM: 52.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 83.3
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 79.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 79.3
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 77.8
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 77.5
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 74.2
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 73.4
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 73.2
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 72.7
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 72.4
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 72.0
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Brain - Putamen (basal ganglia)
Average nTPM: 42.4
Samples: 205

Max nTPM: 67.1
Min nTPM: 20.5
Std nTPM: 8.6
Median nTPM: 42.8
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 67.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 61.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 61.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 60.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 60.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 59.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 59.2
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 59.0
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 58.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 58.3
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 57.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 70.2
FF:10164-103B2 76 years, female 70.2
Globus pallidus
Scaled Tags Per Million: 45.9
FF:10175-103C4 60 years, female 53.6
FF:10161-103A8 76 years, female 38.1
Nucleus accumbens
Scaled Tags Per Million: 102.2
FF:10037-101F1 23-56 years, mixed 102.2
Putamen
Scaled Tags Per Million: 67.3
FF:10176-103C5 60 years, female 67.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 47.5
Pig sample Sample description nTPM
Caudate
nTPM: 46.9
Samples: 4

Max nTPM: 54.9
Min nTPM: 36.8
Sample A Female 36.8
Sample B Female 50.7
Sample C Male 54.9
Sample D Male 45.1
Putamen
nTPM: 47.5
Samples: 4

Max nTPM: 57.3
Min nTPM: 38.8
Sample A Female 38.8
Sample B Female 41.9
Sample C Male 57.3
Sample D Male 51.8
Septum
nTPM: 44.5
Samples: 4

Max nTPM: 63.7
Min nTPM: 36.2
Sample A Female 40.1
Sample B Female 37.8
Sample C Male 63.7
Sample D Male 36.2
Ventral pallidum
nTPM: 45.2
Samples: 4

Max nTPM: 65.4
Min nTPM: 36.8
Sample A Female 36.8
Sample B Female 38.4
Sample C Male 65.4
Sample D Male 40.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 155.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 139.8
Samples: 4

Max nTPM: 153.4
Min nTPM: 126.8
Sample A Male 140.5
Sample B Male 153.4
Sample C Female 126.8
Sample D Female 138.4
Septum
nTPM: 155.6
Samples: 4

Max nTPM: 167.5
Min nTPM: 148.6
Sample A Male 167.5
Sample B Male 148.6
Sample C Female 150.1
Sample D Female 156.0
Ventral forebrain
nTPM: 142.5
Samples: 4

Max nTPM: 144.8
Min nTPM: 138.8
Sample A Male 142.2
Sample B Male 144.2
Sample C Female 144.8
Sample D Female 138.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.6
69134550 Antisense, RP_050321_03_B02, Mouse strain C57BL/6J (56 days, male) 9.7
73811513 Antisense, RP_051212_03_C12, Mouse strain C57BL/6J (56 days, male) 1.5
Pallidum
Expression energy: 4.1
69134550 Antisense, RP_050321_03_B02, Mouse strain C57BL/6J (56 days, male) 6.9
73811513 Antisense, RP_051212_03_C12, Mouse strain C57BL/6J (56 days, male) 1.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.