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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.6 nTPM
HPA:32.6 nTPM
GTEx:42.3 nTPM
FANTOM5:38.5 Scaled Tags Per Million
Pig:57.3 nTPM
Mouse:114.8 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.6
2219 Male, age 76, both hemispheres 40.6
1827 Male, age 72, unknown 30.3
2828 Female, age 72, unknown 26.3
2586 Male, age 75, left hemisphere 25.2
2411 Female, age 72, unknown 21.7
2666 Male, age 74, left hemisphere 18.6
1870 Female, age 42, unknown 16.8
1833 Male, age 53, unknown 14.3
1830 Male, age 51, unknown 9.5
2019 Male, age 18, unknown 2.5
Dorsal raphe nucleus
nTPM: 20.3
2298 Female, age 72, unknown 31.4
2047 Male, age 72, unknown 25.6
2750 Male, age 76, both hemispheres 19.6
1828 Male, age 53, unknown 12.7
2016 Female, age 72, unknown 12.0
Inferior colliculus
nTPM: 12.9
2849 Male, age 72, unknown 16.9
2097 Female, age 72, unknown 13.6
1848 Female, age 42, unknown 11.8
1890 Male, age 53, unknown 9.3
Median raphe nucleus
nTPM: 27.9
2220 Male, age 76, midline 27.9
Pedunculopontine tegmental nucleus
nTPM: 17.0
1921 Female, age 85, both hemispheres 28.7
2334 Male, age 80, both hemispheres 14.5
2338 Male, age 61, both hemispheres 7.9
Periaquaductal grey, anterior
nTPM: 32.6
1795 Male, age 51, unknown 39.2
1947 Male, age 18, unknown 34.1
2502 Female, age 75, unknown 24.3
Periaquaductal grey, dorsal
nTPM: 21.5
1840 Male, age 53, unknown 31.4
1831 Male, age 72, unknown 20.8
2464 Female, age 72, unknown 19.6
2850 Male, age 76, both hemispheres 14.2
Periaquaductal grey, lateral
nTPM: 22.8
2053 Male, age 18, unknown 27.5
2272 Male, age 74, both hemispheres 21.4
2140 Male, age 76, both hemispheres 19.3
Pretectal area
nTPM: 21.7
1816 Male, age 51, unknown 34.3
1944 Female, age 72, unknown 31.1
2224 Female, age 72, unknown 28.8
2825 Male, age 18, unknown 27.1
2667 Female, age 75, unknown 20.3
2407 Male, age 75, both hemispheres 18.1
2007 Male, age 72, unknown 16.7
1815 Male, age 53, unknown 16.6
2273 Male, age 74, both hemispheres 16.6
2316 Male, age 76, right hemisphere 15.1
1817 Female, age 42, unknown 13.6
Red nucleus
nTPM: 6.8
2584 Male, age 75, left hemisphere 18.7
2725 Female, age 75, unknown 13.0
2588 Male, age 74, left hemisphere 12.0
2227 Male, age 72, unknown 6.4
2503 Female, age 72, unknown 6.4
1904 Male, age 53, unknown 6.0
2769 Male, age 72, unknown 5.9
2785 Male, age 18, unknown 4.6
2823 Male, age 76, right hemisphere 3.8
1954 Female, age 42, unknown 3.5
1821 Female, age 72, unknown 1.0
1865 Male, age 51, unknown 0.3
Substantia nigra
nTPM: 15.7
1916 Female, age 42, unknown 24.7
1851 Male, age 51, unknown 19.4
2590 Female, age 75, unknown 18.5
2665 Male, age 74, both hemispheres 17.1
1889 Female, age 72, unknown 16.0
2241 Male, age 72, unknown 14.9
1941 Male, age 53, unknown 14.2
2699 Male, age 18, unknown 12.8
2583 Male, age 75, right hemisphere 12.1
2409 Female, age 72, unknown 7.0
Superior colliculus
nTPM: 21.0
2261 Male, age 18, unknown 37.8
1796 Male, age 53, unknown 36.5
2087 Female, age 72, unknown 30.4
2664 Male, age 75, both hemispheres 22.9
1839 Male, age 51, unknown 17.0
2668 Female, age 75, unknown 16.6
1895 Male, age 76, right hemisphere 14.4
2587 Male, age 74, left hemisphere 13.0
1913 Female, age 42, unknown 12.9
1995 Male, age 72, unknown 8.3
Ventral tegmental area
nTPM: 20.2
1915 Female, age 42, unknown 23.1
1942 Male, age 51, unknown 22.8
2021 Male, age 53, unknown 21.0
2218 Male, age 76, both hemispheres 19.4
2410 Female, age 72, unknown 18.6
2223 Female, age 72, unknown 16.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.3
Samples: 139

Max nTPM: 78.0
Min nTPM: 19.4
Std nTPM: 11.6
Median nTPM: 40.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 78.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 77.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 74.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 71.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 70.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 67.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 65.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 64.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 63.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 60.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 59.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.5
FF:10158-103A5 76 years, female 38.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.3
Pig sample Sample description nTPM
Midbrain
nTPM: 57.3
Samples: 4

Max nTPM: 82.9
Min nTPM: 44.4
Sample A Female 51.3
Sample B Female 44.4
Sample C Male 82.9
Sample D Male 50.7
Periaqueductal gray
nTPM: 46.4
Samples: 3

Max nTPM: 55.7
Min nTPM: 39.6
Sample B Female 44.0
Sample C Male 55.7
Sample D Male 39.6
Substantia nigra
nTPM: 55.2
Samples: 4

Max nTPM: 69.6
Min nTPM: 37.9
Sample A Female 67.5
Sample B Female 45.8
Sample C Male 69.6
Sample D Male 37.9
Superior colliculi
nTPM: 53.9
Samples: 4

Max nTPM: 61.8
Min nTPM: 47.2
Sample A Female 53.1
Sample B Female 47.2
Sample C Male 61.8
Sample D Male 53.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 114.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.8
Samples: 4

Max nTPM: 120.0
Min nTPM: 108.3
Sample A Male 116.8
Sample B Male 108.3
Sample C Female 114.1
Sample D Female 120.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
69134550 Antisense, RP_050321_03_B02, Mouse strain C57BL/6J (56 days, male) 5.5
73811513 Antisense, RP_051212_03_C12, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.