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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.2 nTPM
HPA:12.2 nTPM
GTEx:14.4 nTPM
FANTOM5:19.1 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:47.8 nTPM
Allen mouse:2.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.0
1857 Female, age 85, left hemisphere 11.6
1854 Male, age 80, left hemisphere 11.5
2288 Male, age 75, left hemisphere 11.2
2290 Female, age 72, unknown 11.2
2481 Female, age 94, left hemisphere 11.2
2289 Male, age 61, right hemisphere 10.7
2846 Female, age 79, unknown 10.4
1781 Male, age 74, unknown 9.9
Claustrum
nTPM: 9.6
2196 Female, age 79, unknown 10.7
2392 Female, age 94, both hemispheres 10.4
1956 Male, age 74, unknown 10.2
2198 Male, age 80, both hemispheres 9.8
2491 Male, age 75, both hemispheres 9.7
2568 Male, age 61, both hemispheres 9.6
2292 Female, age 85, both hemispheres 9.3
2284 Female, age 91, both hemispheres 8.5
2645 Female, age 72, unknown 8.1
Globus pallidus, externus
nTPM: 11.7
2772 Female, age 79, unknown 14.9
1996 Male, age 80, right hemisphere 13.2
2395 Male, age 75, both hemispheres 11.1
2646 Male, age 61, right hemisphere 10.0
2567 Female, age 72, unknown 9.3
Globus pallidus, internus
nTPM: 12.2
2287 Male, age 75, right hemisphere 14.3
2778 Female, age 91, both hemispheres 13.0
2483 Female, age 94, right hemisphere 12.1
2037 Male, age 80, right hemisphere 12.0
2111 Female, age 85, right hemisphere 12.0
1818 Male, age 74, unknown 11.2
2566 Female, age 72, unknown 10.7
Nucleus accumbens
nTPM: 11.4
1806 Female, age 85, left hemisphere 12.1
2286 Male, age 75, left hemisphere 12.0
2391 Female, age 94, left hemisphere 11.7
2698 Female, age 72, unknown 11.5
2824 Male, age 61, right hemisphere 11.5
1856 Female, age 91, right hemisphere 10.9
2732 Male, age 80, right hemisphere 10.8
1783 Male, age 74, unknown 10.7
Nucleus basalis of Meynert
nTPM: 10.2
2821 Male, age 75, both hemispheres 10.6
2393 Male, age 80, right hemisphere 10.5
2569 Male, age 61, both hemispheres 10.0
2484 Female, age 94, left hemisphere 9.8
Nucleus of the diagonal band
nTPM: 12.2
2775 Male, age 80, right hemisphere 13.3
1979 Male, age 74, unknown 12.6
2195 Female, age 85, both hemispheres 12.0
1812 Female, age 91, both hemispheres 11.8
2029 Male, age 61, right hemisphere 11.6
Olfactory tubercle
nTPM: 10.2
1846 Male, age 80, right hemisphere 10.6
2487 Female, age 94, left hemisphere 10.6
1998 Female, age 91, both hemispheres 9.9
2856 Male, age 75, right hemisphere 9.7
Putamen
nTPM: 9.9
1838 Male, age 80, right hemisphere 11.1
1937 Female, age 91, right hemisphere 11.0
2482 Female, age 94, left hemisphere 10.3
1829 Male, age 74, unknown 10.2
2466 Female, age 79, unknown 10.2
2647 Male, age 75, left hemisphere 8.3
2489 Female, age 72, unknown 8.1
Septal nuclei
nTPM: 11.4
2031 Female, age 72, unknown 12.6
2394 Male, age 61, left hemisphere 12.0
2009 Female, age 91, both hemispheres 11.6
2199 Male, age 80, right hemisphere 11.6
2629 Female, age 94, right hemisphere 11.4
1960 Male, age 74, unknown 10.7
2059 Female, age 85, both hemispheres 10.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.5
Samples: 246

Max nTPM: 25.2
Min nTPM: 7.9
Std nTPM: 2.8
Median nTPM: 13.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 25.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 25.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 24.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 23.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 22.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 20.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 20.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 20.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 19.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 19.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 19.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.4
Samples: 246

Max nTPM: 36.5
Min nTPM: 6.6
Std nTPM: 3.8
Median nTPM: 13.7
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 36.5
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 34.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 26.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 26.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 25.0
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 23.6
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 22.9
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 22.1
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 22.0
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 21.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 21.0
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Brain - Putamen (basal ganglia)
Average nTPM: 12.1
Samples: 205

Max nTPM: 23.2
Min nTPM: 6.7
Std nTPM: 2.5
Median nTPM: 11.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 23.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 22.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 17.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 16.9
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 16.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 16.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 16.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 16.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 16.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 16.0
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 16.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.3
FF:10164-103B2 76 years, female 18.3
Globus pallidus
Scaled Tags Per Million: 17.1
FF:10175-103C4 60 years, female 17.3
FF:10161-103A8 76 years, female 16.9
Nucleus accumbens
Scaled Tags Per Million: 12.2
FF:10037-101F1 23-56 years, mixed 12.2
Putamen
Scaled Tags Per Million: 19.1
FF:10176-103C5 60 years, female 19.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.7
Pig sample Sample description nTPM
Caudate
nTPM: 8.6
Samples: 4

Max nTPM: 9.9
Min nTPM: 7.3
Sample A Female 9.9
Sample B Female 9.7
Sample C Male 7.5
Sample D Male 7.3
Putamen
nTPM: 8.9
Samples: 4

Max nTPM: 12.5
Min nTPM: 6.5
Sample A Female 12.5
Sample B Female 6.5
Sample C Male 8.1
Sample D Male 8.3
Septum
nTPM: 15.7
Samples: 4

Max nTPM: 23.6
Min nTPM: 10.1
Sample A Female 13.0
Sample B Female 16.0
Sample C Male 23.6
Sample D Male 10.1
Ventral pallidum
nTPM: 14.7
Samples: 4

Max nTPM: 23.1
Min nTPM: 8.5
Sample A Female 8.5
Sample B Female 16.1
Sample C Male 23.1
Sample D Male 11.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 47.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 32.3
Samples: 4

Max nTPM: 35.1
Min nTPM: 28.2
Sample A Male 35.1
Sample B Male 34.8
Sample C Female 31.2
Sample D Female 28.2
Septum
nTPM: 47.8
Samples: 4

Max nTPM: 50.2
Min nTPM: 45.7
Sample A Male 45.7
Sample B Male 50.2
Sample C Female 49.3
Sample D Female 46.0
Ventral forebrain
nTPM: 38.1
Samples: 4

Max nTPM: 44.2
Min nTPM: 33.6
Sample A Male 33.6
Sample B Male 44.2
Sample C Female 39.7
Sample D Female 35.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.9
71612180 Antisense, RP_050927_02_C05, Mouse strain C57BL/6J (56 days, male) 1.9
73732145 Antisense, RP_050927_02_C05, Mouse strain C57BL/6J (56 days, male) 1.6
Pallidum
Expression energy: 2.7
71612180 Antisense, RP_050927_02_C05, Mouse strain C57BL/6J (56 days, male) 2.7
73732145 Antisense, RP_050927_02_C05, Mouse strain C57BL/6J (56 days, male) 2.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.