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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:73.5 nTPM
HPA:73.5 nTPM
GTEx:58.7 nTPM
FANTOM5:183.8 Scaled Tags Per Million
Pig:117.1 nTPM
Mouse:82.5 nTPM
Allen mouse:2.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038621Antibody HPA038622
Glial cells MediumMedium
Neuronal cells HighHigh




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 73.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.6
1781 Male, age 74, unknown 47.5
1857 Female, age 85, left hemisphere 35.8
2290 Female, age 72, unknown 35.2
2288 Male, age 75, left hemisphere 34.9
2846 Female, age 79, unknown 34.0
2481 Female, age 94, left hemisphere 32.8
1854 Male, age 80, left hemisphere 30.3
2289 Male, age 61, right hemisphere 26.2
Claustrum
nTPM: 73.5
2645 Female, age 72, unknown 96.2
2198 Male, age 80, both hemispheres 90.2
2284 Female, age 91, both hemispheres 80.1
2568 Male, age 61, both hemispheres 80.0
2491 Male, age 75, both hemispheres 77.9
1956 Male, age 74, unknown 68.9
2196 Female, age 79, unknown 61.5
2392 Female, age 94, both hemispheres 54.1
2292 Female, age 85, both hemispheres 52.9
Globus pallidus, externus
nTPM: 26.5
2772 Female, age 79, unknown 31.0
2395 Male, age 75, both hemispheres 30.2
2646 Male, age 61, right hemisphere 27.1
2567 Female, age 72, unknown 22.6
1996 Male, age 80, right hemisphere 21.7
Globus pallidus, internus
nTPM: 24.7
2483 Female, age 94, right hemisphere 39.5
2287 Male, age 75, right hemisphere 34.8
1818 Male, age 74, unknown 22.1
2778 Female, age 91, both hemispheres 20.7
2037 Male, age 80, right hemisphere 20.0
2566 Female, age 72, unknown 19.1
2111 Female, age 85, right hemisphere 16.6
Nucleus accumbens
nTPM: 31.1
1783 Male, age 74, unknown 39.3
1856 Female, age 91, right hemisphere 38.0
2286 Male, age 75, left hemisphere 37.6
1806 Female, age 85, left hemisphere 31.8
2824 Male, age 61, right hemisphere 31.8
2698 Female, age 72, unknown 26.3
2732 Male, age 80, right hemisphere 22.6
2391 Female, age 94, left hemisphere 21.1
Nucleus basalis of Meynert
nTPM: 27.3
2484 Female, age 94, left hemisphere 34.3
2569 Male, age 61, both hemispheres 27.8
2821 Male, age 75, both hemispheres 25.4
2393 Male, age 80, right hemisphere 21.9
Nucleus of the diagonal band
nTPM: 66.2
2775 Male, age 80, right hemisphere 80.0
2029 Male, age 61, right hemisphere 78.9
1812 Female, age 91, both hemispheres 69.4
2195 Female, age 85, both hemispheres 66.0
1979 Male, age 74, unknown 36.7
Olfactory tubercle
nTPM: 71.1
1998 Female, age 91, both hemispheres 86.6
1846 Male, age 80, right hemisphere 71.7
2487 Female, age 94, left hemisphere 66.6
2856 Male, age 75, right hemisphere 59.5
Putamen
nTPM: 34.7
2647 Male, age 75, left hemisphere 44.5
2466 Female, age 79, unknown 38.7
1838 Male, age 80, right hemisphere 35.1
2482 Female, age 94, left hemisphere 33.4
1937 Female, age 91, right hemisphere 33.3
2489 Female, age 72, unknown 29.3
1829 Male, age 74, unknown 28.9
Septal nuclei
nTPM: 54.0
2031 Female, age 72, unknown 89.0
1960 Male, age 74, unknown 88.3
2009 Female, age 91, both hemispheres 56.2
2629 Female, age 94, right hemisphere 48.9
2059 Female, age 85, both hemispheres 46.1
2394 Male, age 61, left hemisphere 27.6
2199 Male, age 80, right hemisphere 21.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 58.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 51.2
Samples: 246

Max nTPM: 163.4
Min nTPM: 26.9
Std nTPM: 12.5
Median nTPM: 50.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 163.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 105.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 79.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 76.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 73.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 73.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 73.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 72.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 70.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 70.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 68.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 58.7
Samples: 246

Max nTPM: 83.8
Min nTPM: 19.3
Std nTPM: 11.6
Median nTPM: 59.7
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 83.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 81.0
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 80.9
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 80.8
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 80.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 80.5
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 79.3
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 78.7
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 76.6
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 76.5
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 76.3
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Brain - Putamen (basal ganglia)
Average nTPM: 51.7
Samples: 205

Max nTPM: 104.7
Min nTPM: 24.5
Std nTPM: 8.7
Median nTPM: 51.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 104.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 72.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 72.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 71.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 70.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 70.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 69.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 69.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 68.8
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 68.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 67.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 183.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 95.1
FF:10164-103B2 76 years, female 95.1
Globus pallidus
Scaled Tags Per Million: 58.1
FF:10161-103A8 76 years, female 59.4
FF:10175-103C4 60 years, female 56.8
Nucleus accumbens
Scaled Tags Per Million: 183.8
FF:10037-101F1 23-56 years, mixed 183.8
Putamen
Scaled Tags Per Million: 123.2
FF:10176-103C5 60 years, female 123.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 117.1
Pig sample Sample description nTPM
Caudate
nTPM: 117.1
Samples: 4

Max nTPM: 136.9
Min nTPM: 90.8
Sample A Female 90.8
Sample B Female 136.9
Sample C Male 136.9
Sample D Male 103.6
Putamen
nTPM: 104.3
Samples: 4

Max nTPM: 119.5
Min nTPM: 92.8
Sample A Female 92.8
Sample B Female 100.2
Sample C Male 119.5
Sample D Male 104.6
Septum
nTPM: 96.5
Samples: 4

Max nTPM: 106.8
Min nTPM: 84.3
Sample A Female 106.8
Sample B Female 99.7
Sample C Male 95.0
Sample D Male 84.3
Ventral pallidum
nTPM: 102.8
Samples: 4

Max nTPM: 122.8
Min nTPM: 82.1
Sample A Female 82.1
Sample B Female 122.8
Sample C Male 116.7
Sample D Male 89.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 82.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 77.2
Samples: 4

Max nTPM: 81.3
Min nTPM: 73.0
Sample A Male 73.0
Sample B Male 73.4
Sample C Female 81.2
Sample D Female 81.3
Septum
nTPM: 82.5
Samples: 4

Max nTPM: 86.5
Min nTPM: 78.3
Sample A Male 86.5
Sample B Male 78.3
Sample C Female 83.8
Sample D Female 81.3
Ventral forebrain
nTPM: 81.4
Samples: 4

Max nTPM: 84.6
Min nTPM: 78.9
Sample A Male 79.2
Sample B Male 82.7
Sample C Female 78.9
Sample D Female 84.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.0
68798244 Antisense, RP_050215_02_A10, Mouse strain C57BL/6J (56 days, male) 2.0
Pallidum
Expression energy: 1.8
68798244 Antisense, RP_050215_02_A10, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.