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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:85.0 nTPM
HPA:85.0 nTPM
GTEx:77.0 nTPM
FANTOM5:132.0 Scaled Tags Per Million
Pig:166.2 nTPM
Mouse:100.0 nTPM
Allen mouse:6.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038621Antibody HPA038622
Glial cells LowNot detected
Neuronal cells MediumNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 85.0
Sample id Sample description nTPM
Hippocampus
nTPM: 59.0
1898 Male, age 80, left hemisphere 77.4
1855 Male, age 76, left hemisphere 73.9
2148 Female, age 91, left hemisphere 62.9
2621 Female, age 67, right hemisphere 57.0
2529 Female, age 94, left hemisphere 43.4
1911 Female, age 85, right hemisphere 39.7
Dentate gyrus
nTPM: 65.1
2530 Female, age 94, left hemisphere 78.9
2010 Male, age 76, both hemispheres 76.5
1927 Female, age 91, both hemispheres 70.3
2531 Female, age 67, both hemispheres 61.9
2528 Male, age 74, both hemispheres 54.7
2246 Female, age 85, both hemispheres 48.4
Entorhinal gyrus
nTPM: 66.8
2764 Male, age 80, right hemisphere 88.9
2613 Female, age 94, left hemisphere 80.1
1938 Female, age 85, left hemisphere 73.6
1787 Male, age 76, left hemisphere 69.0
2686 Male, age 75, right hemisphere 47.7
2117 Female, age 91, right hemisphere 41.7
Hippocampus, CA1
nTPM: 70.0
2749 Male, age 80, left hemisphere 121.7
2045 Male, age 76, both hemispheres 67.0
1873 Female, age 85, both hemispheres 63.7
2527 Male, age 74, both hemispheres 52.8
2082 Female, age 91, right hemisphere 44.7
Hippocampus, CA2
nTPM: 63.1
1963 Male, age 80, left hemisphere 88.0
1892 Male, age 76, both hemispheres 83.8
2437 Female, age 94, left hemisphere 58.9
1940 Female, age 85, left hemisphere 55.4
2113 Female, age 91, right hemisphere 50.3
2249 Male, age 74, both hemispheres 42.4
Hippocampus, CA3
nTPM: 67.3
2137 Male, age 80, left hemisphere 97.4
2861 Female, age 67, both hemispheres 80.6
2620 Female, age 94, left hemisphere 76.2
1867 Male, age 76, both hemispheres 68.4
2436 Male, age 74, both hemispheres 41.1
1891 Female, age 85, both hemispheres 40.2
Parahippocampal cortex
nTPM: 65.2
1850 Male, age 80, both hemispheres 85.3
2532 Female, age 72, left hemisphere 73.2
1933 Female, age 85, both hemispheres 70.9
2245 Female, age 91, both hemispheres 67.9
1990 Female, age 91, right hemisphere 67.0
2622 Female, age 67, right hemisphere 66.0
2018 Male, age 76, both hemispheres 61.3
2693 Female, age 94, both hemispheres 57.8
2250 Female, age 67, right hemisphere 51.5
2692 Male, age 74, both hemispheres 51.2
Perirhinal gyrus
nTPM: 85.0
1794 Male, age 80, right hemisphere 105.6
1847 Female, age 91, left hemisphere 98.2
2521 Female, age 94, right hemisphere 81.3
1841 Female, age 85, right hemisphere 77.2
2848 Male, age 76, right hemisphere 62.9
Subiculum
nTPM: 47.0
1977 Female, age 85, both hemispheres 60.7
1901 Male, age 80, both hemispheres 57.7
2619 Male, age 74, both hemispheres 46.2
2729 Female, age 91, right hemisphere 46.1
2042 Male, age 76, both hemispheres 41.4
2438 Female, age 94, left hemisphere 30.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 77.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 77.0
Samples: 197

Max nTPM: 186.2
Min nTPM: 22.7
Std nTPM: 34.5
Median nTPM: 73.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 186.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 186.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 183.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 175.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 168.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 164.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 156.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 147.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 141.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 140.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 140.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 132.0
FF:10169-103B7 60 years, female 154.8
FF:10153-102I9 76 years, female 109.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 166.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 166.2
Samples: 4

Max nTPM: 244.0
Min nTPM: 110.8
Sample A Female 244.0
Sample B Female 181.4
Sample C Male 128.5
Sample D Male 110.8
Entorhinal cortex
nTPM: 151.6
Samples: 4

Max nTPM: 173.8
Min nTPM: 117.4
Sample A Female 157.3
Sample B Female 158.0
Sample C Male 173.8
Sample D Male 117.4
Subiculum
nTPM: 143.8
Samples: 4

Max nTPM: 211.4
Min nTPM: 102.0
Sample A Female 211.4
Sample B Female 129.5
Sample C Male 132.3
Sample D Male 102.0
Ventral hippocampus
nTPM: 164.9
Samples: 4

Max nTPM: 194.6
Min nTPM: 114.6
Sample A Female 190.2
Sample B Female 114.6
Sample C Male 194.6
Sample D Male 160.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 100.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 91.2
Samples: 4

Max nTPM: 94.7
Min nTPM: 87.1
Sample A Male 87.1
Sample B Male 90.4
Sample C Female 92.7
Sample D Female 94.7
Hippocampal formation
nTPM: 100.0
Samples: 4

Max nTPM: 106.9
Min nTPM: 96.7
Sample A Male 98.9
Sample B Male 96.7
Sample C Female 106.9
Sample D Female 97.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.3
68798244 Antisense, RP_050215_02_A10, Mouse strain C57BL/6J (56 days, male) 6.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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