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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.8 nTPM
HPA:27.8 nTPM
GTEx:34.3 nTPM
FANTOM5:41.2 Scaled Tags Per Million
Pig:23.8 nTPM
Mouse:15.5 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.2
2586 Male, age 75, left hemisphere 40.7
2828 Female, age 72, unknown 35.1
2666 Male, age 74, left hemisphere 32.0
1827 Male, age 72, unknown 28.2
2219 Male, age 76, both hemispheres 27.9
1833 Male, age 53, unknown 23.2
1870 Female, age 42, unknown 23.2
1830 Male, age 51, unknown 23.1
2411 Female, age 72, unknown 20.4
2019 Male, age 18, unknown 18.3
Dorsal raphe nucleus
nTPM: 20.1
2047 Male, age 72, unknown 23.8
2750 Male, age 76, both hemispheres 20.9
2016 Female, age 72, unknown 20.0
1828 Male, age 53, unknown 19.6
2298 Female, age 72, unknown 16.3
Inferior colliculus
nTPM: 25.5
2849 Male, age 72, unknown 32.7
1848 Female, age 42, unknown 25.6
1890 Male, age 53, unknown 22.9
2097 Female, age 72, unknown 20.7
Median raphe nucleus
nTPM: 19.4
2220 Male, age 76, midline 19.4
Pedunculopontine tegmental nucleus
nTPM: 20.7
1921 Female, age 85, both hemispheres 21.6
2334 Male, age 80, both hemispheres 20.9
2338 Male, age 61, both hemispheres 19.6
Periaquaductal grey, anterior
nTPM: 27.8
2502 Female, age 75, unknown 29.2
1795 Male, age 51, unknown 28.8
1947 Male, age 18, unknown 25.5
Periaquaductal grey, dorsal
nTPM: 22.5
2464 Female, age 72, unknown 23.8
1840 Male, age 53, unknown 22.2
2850 Male, age 76, both hemispheres 22.1
1831 Male, age 72, unknown 22.0
Periaquaductal grey, lateral
nTPM: 20.3
2053 Male, age 18, unknown 23.4
2140 Male, age 76, both hemispheres 22.2
2272 Male, age 74, both hemispheres 15.2
Pretectal area
nTPM: 21.4
2407 Male, age 75, both hemispheres 28.8
2825 Male, age 18, unknown 28.5
2316 Male, age 76, right hemisphere 25.2
1815 Male, age 53, unknown 21.4
2007 Male, age 72, unknown 21.1
1816 Male, age 51, unknown 21.0
2667 Female, age 75, unknown 20.5
1817 Female, age 42, unknown 20.0
1944 Female, age 72, unknown 19.2
2224 Female, age 72, unknown 18.7
2273 Male, age 74, both hemispheres 10.8
Red nucleus
nTPM: 22.5
2584 Male, age 75, left hemisphere 34.0
2823 Male, age 76, right hemisphere 29.5
2725 Female, age 75, unknown 25.4
2769 Male, age 72, unknown 24.6
2588 Male, age 74, left hemisphere 23.8
2227 Male, age 72, unknown 23.3
2785 Male, age 18, unknown 20.8
1865 Male, age 51, unknown 19.9
2503 Female, age 72, unknown 19.9
1904 Male, age 53, unknown 17.4
1954 Female, age 42, unknown 16.2
1821 Female, age 72, unknown 15.8
Substantia nigra
nTPM: 21.3
2665 Male, age 74, both hemispheres 31.4
1941 Male, age 53, unknown 30.3
2583 Male, age 75, right hemisphere 23.9
2699 Male, age 18, unknown 23.2
2590 Female, age 75, unknown 22.2
1916 Female, age 42, unknown 19.9
1851 Male, age 51, unknown 19.6
1889 Female, age 72, unknown 18.7
2409 Female, age 72, unknown 12.3
2241 Male, age 72, unknown 11.2
Superior colliculus
nTPM: 24.7
2664 Male, age 75, both hemispheres 36.3
1839 Male, age 51, unknown 28.4
1796 Male, age 53, unknown 26.7
1895 Male, age 76, right hemisphere 25.5
1913 Female, age 42, unknown 23.8
2261 Male, age 18, unknown 23.2
2587 Male, age 74, left hemisphere 22.8
1995 Male, age 72, unknown 21.6
2087 Female, age 72, unknown 19.5
2668 Female, age 75, unknown 19.2
Ventral tegmental area
nTPM: 20.5
1942 Male, age 51, unknown 22.8
2223 Female, age 72, unknown 22.6
2218 Male, age 76, both hemispheres 21.3
2021 Male, age 53, unknown 20.7
1915 Female, age 42, unknown 18.6
2410 Female, age 72, unknown 17.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.3
Samples: 139

Max nTPM: 52.2
Min nTPM: 16.4
Std nTPM: 6.9
Median nTPM: 34.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 52.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 48.9
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 48.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 48.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 48.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 47.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 47.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 47.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 46.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 45.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 44.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.2
FF:10158-103A5 76 years, female 41.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.8
Pig sample Sample description nTPM
Midbrain
nTPM: 23.4
Samples: 4

Max nTPM: 25.7
Min nTPM: 19.4
Sample A Female 24.7
Sample B Female 19.4
Sample C Male 25.7
Sample D Male 23.7
Periaqueductal gray
nTPM: 19.9
Samples: 3

Max nTPM: 22.9
Min nTPM: 18.2
Sample B Female 18.7
Sample C Male 22.9
Sample D Male 18.2
Substantia nigra
nTPM: 22.7
Samples: 4

Max nTPM: 25.4
Min nTPM: 20.4
Sample A Female 23.0
Sample B Female 20.4
Sample C Male 25.4
Sample D Male 21.8
Superior colliculi
nTPM: 23.9
Samples: 4

Max nTPM: 27.2
Min nTPM: 21.3
Sample A Female 23.7
Sample B Female 21.3
Sample C Male 23.2
Sample D Male 27.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.5
Samples: 4

Max nTPM: 17.2
Min nTPM: 13.2
Sample A Male 16.9
Sample B Male 14.7
Sample C Female 13.2
Sample D Female 17.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
71307244 Antisense, RP_050825_01_E05, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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