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SMARCD3
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:101.9 nTPM
HPA:101.9 nTPM
GTEx:152.6 nTPM
FANTOM5:124.4 Scaled Tags Per Million
Pig:46.5 nTPM
Mouse:109.7 nTPM
Allen mouse:13.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA063955
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 101.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 90.8
2290 Female, age 72, unknown 102.5
1857 Female, age 85, left hemisphere 97.7
1854 Male, age 80, left hemisphere 93.3
1781 Male, age 74, unknown 93.1
2846 Female, age 79, unknown 88.8
2289 Male, age 61, right hemisphere 84.7
2481 Female, age 94, left hemisphere 83.3
2288 Male, age 75, left hemisphere 82.9
Claustrum
nTPM: 92.9
2198 Male, age 80, both hemispheres 104.7
2284 Female, age 91, both hemispheres 102.2
2568 Male, age 61, both hemispheres 102.0
2491 Male, age 75, both hemispheres 100.7
2645 Female, age 72, unknown 94.8
2196 Female, age 79, unknown 88.3
2392 Female, age 94, both hemispheres 87.5
1956 Male, age 74, unknown 79.4
2292 Female, age 85, both hemispheres 76.6
Globus pallidus, externus
nTPM: 71.9
2646 Male, age 61, right hemisphere 75.8
2772 Female, age 79, unknown 74.6
1996 Male, age 80, right hemisphere 72.7
2567 Female, age 72, unknown 70.0
2395 Male, age 75, both hemispheres 66.6
Globus pallidus, internus
nTPM: 69.2
2483 Female, age 94, right hemisphere 78.3
1818 Male, age 74, unknown 70.9
2566 Female, age 72, unknown 69.9
2037 Male, age 80, right hemisphere 69.8
2287 Male, age 75, right hemisphere 67.8
2778 Female, age 91, both hemispheres 65.2
2111 Female, age 85, right hemisphere 62.9
Nucleus accumbens
nTPM: 92.4
1856 Female, age 91, right hemisphere 109.2
1783 Male, age 74, unknown 108.1
1806 Female, age 85, left hemisphere 99.0
2698 Female, age 72, unknown 94.0
2824 Male, age 61, right hemisphere 93.7
2286 Male, age 75, left hemisphere 82.5
2732 Male, age 80, right hemisphere 82.1
2391 Female, age 94, left hemisphere 70.6
Nucleus basalis of Meynert
nTPM: 82.8
2484 Female, age 94, left hemisphere 90.0
2393 Male, age 80, right hemisphere 85.4
2569 Male, age 61, both hemispheres 82.1
2821 Male, age 75, both hemispheres 73.6
Nucleus of the diagonal band
nTPM: 101.9
2775 Male, age 80, right hemisphere 113.8
2195 Female, age 85, both hemispheres 113.0
2029 Male, age 61, right hemisphere 96.4
1812 Female, age 91, both hemispheres 95.5
1979 Male, age 74, unknown 90.6
Olfactory tubercle
nTPM: 100.4
2487 Female, age 94, left hemisphere 107.7
1998 Female, age 91, both hemispheres 100.5
1846 Male, age 80, right hemisphere 99.6
2856 Male, age 75, right hemisphere 93.5
Putamen
nTPM: 88.7
1838 Male, age 80, right hemisphere 97.9
1937 Female, age 91, right hemisphere 91.8
2647 Male, age 75, left hemisphere 88.7
2489 Female, age 72, unknown 88.2
2466 Female, age 79, unknown 87.8
1829 Male, age 74, unknown 84.9
2482 Female, age 94, left hemisphere 81.8
Septal nuclei
nTPM: 99.7
1960 Male, age 74, unknown 119.9
2059 Female, age 85, both hemispheres 109.3
2031 Female, age 72, unknown 100.6
2394 Male, age 61, left hemisphere 95.2
2009 Female, age 91, both hemispheres 95.1
2629 Female, age 94, right hemisphere 95.1
2199 Male, age 80, right hemisphere 82.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 152.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 113.3
Samples: 246

Max nTPM: 224.5
Min nTPM: 41.9
Std nTPM: 30.8
Median nTPM: 109.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 224.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 206.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 197.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 194.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 191.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 190.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 188.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 188.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 182.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 174.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 172.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 152.6
Samples: 246

Max nTPM: 302.5
Min nTPM: 30.4
Std nTPM: 44.2
Median nTPM: 150.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 302.5
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 274.3
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 267.9
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 255.3
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 254.6
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 240.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 235.0
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 232.5
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 232.3
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 230.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 226.5
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Brain - Putamen (basal ganglia)
Average nTPM: 118.0
Samples: 205

Max nTPM: 242.6
Min nTPM: 33.9
Std nTPM: 35.3
Median nTPM: 115.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 242.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 222.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 219.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 212.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 211.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 205.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 188.2
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 187.2
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 181.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 181.1
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 175.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 124.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 110.3
FF:10164-103B2 76 years, female 110.3
Globus pallidus
Scaled Tags Per Million: 52.4
FF:10161-103A8 76 years, female 56.0
FF:10175-103C4 60 years, female 48.9
Nucleus accumbens
Scaled Tags Per Million: 101.8
FF:10037-101F1 23-56 years, mixed 101.8
Putamen
Scaled Tags Per Million: 124.4
FF:10176-103C5 60 years, female 124.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 46.5
Pig sample Sample description nTPM
Caudate
nTPM: 46.5
Samples: 4

Max nTPM: 56.7
Min nTPM: 33.8
Sample A Female 33.8
Sample B Female 51.4
Sample C Male 56.7
Sample D Male 44.1
Putamen
nTPM: 43.3
Samples: 4

Max nTPM: 62.7
Min nTPM: 22.3
Sample A Female 22.3
Sample B Female 43.0
Sample C Male 62.7
Sample D Male 45.2
Septum
nTPM: 32.0
Samples: 4

Max nTPM: 38.7
Min nTPM: 21.2
Sample A Female 38.0
Sample B Female 38.7
Sample C Male 30.0
Sample D Male 21.2
Ventral pallidum
nTPM: 35.3
Samples: 4

Max nTPM: 42.8
Min nTPM: 31.0
Sample A Female 34.3
Sample B Female 42.8
Sample C Male 33.2
Sample D Male 31.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 109.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 109.7
Samples: 4

Max nTPM: 113.9
Min nTPM: 104.0
Sample A Male 110.9
Sample B Male 113.9
Sample C Female 104.0
Sample D Female 109.9
Septum
nTPM: 61.5
Samples: 4

Max nTPM: 65.3
Min nTPM: 57.6
Sample A Male 64.5
Sample B Male 65.3
Sample C Female 57.6
Sample D Female 58.7
Ventral forebrain
nTPM: 91.9
Samples: 4

Max nTPM: 103.4
Min nTPM: 85.5
Sample A Male 86.8
Sample B Male 91.7
Sample C Female 103.4
Sample D Female 85.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 13.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 13.4
100143575 Antisense, RP_110407_01_F08, Mouse strain C57BL/6J (56 days, male) 13.4
Pallidum
Expression energy: 10.2
100143575 Antisense, RP_110407_01_F08, Mouse strain C57BL/6J (56 days, male) 10.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.