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SMARCD3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:89.8 nTPM
HPA:89.8 nTPM
GTEx:67.2 nTPM
FANTOM5:43.9 Scaled Tags Per Million
Pig:28.2 nTPM
Mouse:61.9 nTPM
Allen mouse:9.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 89.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.5
2586 Male, age 75, left hemisphere 93.2
1827 Male, age 72, unknown 89.0
2828 Female, age 72, unknown 84.9
2666 Male, age 74, left hemisphere 80.4
2219 Male, age 76, both hemispheres 79.4
2411 Female, age 72, unknown 79.4
1870 Female, age 42, unknown 76.6
1833 Male, age 53, unknown 75.6
2019 Male, age 18, unknown 74.1
1830 Male, age 51, unknown 72.0
Dorsal raphe nucleus
nTPM: 76.9
2298 Female, age 72, unknown 82.3
2047 Male, age 72, unknown 79.2
2750 Male, age 76, both hemispheres 76.1
2016 Female, age 72, unknown 74.5
1828 Male, age 53, unknown 72.6
Inferior colliculus
nTPM: 83.4
2097 Female, age 72, unknown 89.2
2849 Male, age 72, unknown 82.2
1848 Female, age 42, unknown 81.4
1890 Male, age 53, unknown 80.8
Median raphe nucleus
nTPM: 83.0
2220 Male, age 76, midline 83.0
Pedunculopontine tegmental nucleus
nTPM: 75.5
1921 Female, age 85, both hemispheres 82.1
2334 Male, age 80, both hemispheres 74.6
2338 Male, age 61, both hemispheres 69.9
Periaquaductal grey, anterior
nTPM: 89.8
1795 Male, age 51, unknown 91.4
2502 Female, age 75, unknown 90.0
1947 Male, age 18, unknown 88.0
Periaquaductal grey, dorsal
nTPM: 79.9
1840 Male, age 53, unknown 89.2
2464 Female, age 72, unknown 81.5
1831 Male, age 72, unknown 75.8
2850 Male, age 76, both hemispheres 73.1
Periaquaductal grey, lateral
nTPM: 76.4
2053 Male, age 18, unknown 81.9
2140 Male, age 76, both hemispheres 74.6
2272 Male, age 74, both hemispheres 72.7
Pretectal area
nTPM: 81.2
1816 Male, age 51, unknown 90.6
1817 Female, age 42, unknown 86.5
1944 Female, age 72, unknown 86.5
2007 Male, age 72, unknown 85.6
2825 Male, age 18, unknown 82.2
2224 Female, age 72, unknown 82.0
1815 Male, age 53, unknown 79.7
2316 Male, age 76, right hemisphere 78.3
2667 Female, age 75, unknown 77.2
2407 Male, age 75, both hemispheres 74.0
2273 Male, age 74, both hemispheres 70.3
Red nucleus
nTPM: 74.2
2588 Male, age 74, left hemisphere 78.5
2503 Female, age 72, unknown 77.9
2584 Male, age 75, left hemisphere 76.4
2769 Male, age 72, unknown 76.1
2227 Male, age 72, unknown 75.6
1954 Female, age 42, unknown 75.2
1821 Female, age 72, unknown 74.6
2785 Male, age 18, unknown 73.6
2725 Female, age 75, unknown 73.4
1904 Male, age 53, unknown 71.6
1865 Male, age 51, unknown 68.8
2823 Male, age 76, right hemisphere 68.8
Substantia nigra
nTPM: 80.5
2665 Male, age 74, both hemispheres 90.1
1916 Female, age 42, unknown 87.6
1889 Female, age 72, unknown 84.9
1851 Male, age 51, unknown 82.0
2590 Female, age 75, unknown 81.2
1941 Male, age 53, unknown 79.3
2241 Male, age 72, unknown 78.4
2699 Male, age 18, unknown 75.8
2409 Female, age 72, unknown 73.1
2583 Male, age 75, right hemisphere 72.3
Superior colliculus
nTPM: 80.8
1796 Male, age 53, unknown 91.0
2664 Male, age 75, both hemispheres 87.6
2261 Male, age 18, unknown 85.9
2087 Female, age 72, unknown 84.5
2668 Female, age 75, unknown 83.2
1839 Male, age 51, unknown 82.8
2587 Male, age 74, left hemisphere 77.3
1895 Male, age 76, right hemisphere 75.7
1913 Female, age 42, unknown 71.0
1995 Male, age 72, unknown 69.4
Ventral tegmental area
nTPM: 78.6
2410 Female, age 72, unknown 82.5
1915 Female, age 42, unknown 81.8
1942 Male, age 51, unknown 80.2
2218 Male, age 76, both hemispheres 79.5
2021 Male, age 53, unknown 76.8
2223 Female, age 72, unknown 70.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.2
Samples: 139

Max nTPM: 133.4
Min nTPM: 16.8
Std nTPM: 20.6
Median nTPM: 68.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 133.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 120.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 113.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 110.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 105.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 100.7
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 100.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 100.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 98.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 97.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 96.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.9
FF:10158-103A5 76 years, female 43.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.2
Pig sample Sample description nTPM
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 31.8
Min nTPM: 21.9
Sample A Female 27.5
Sample B Female 21.9
Sample C Male 31.8
Sample D Male 31.8
Periaqueductal gray
nTPM: 23.2
Samples: 3

Max nTPM: 26.5
Min nTPM: 19.7
Sample B Female 23.3
Sample C Male 26.5
Sample D Male 19.7
Substantia nigra
nTPM: 24.2
Samples: 4

Max nTPM: 30.2
Min nTPM: 16.2
Sample A Female 30.2
Sample B Female 22.8
Sample C Male 27.5
Sample D Male 16.2
Superior colliculi
nTPM: 25.5
Samples: 4

Max nTPM: 33.8
Min nTPM: 17.6
Sample A Female 33.8
Sample B Female 17.6
Sample C Male 24.1
Sample D Male 26.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.9
Samples: 4

Max nTPM: 64.0
Min nTPM: 59.7
Sample A Male 63.9
Sample B Male 64.0
Sample C Female 59.9
Sample D Female 59.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
100143575 Antisense, RP_110407_01_F08, Mouse strain C57BL/6J (56 days, male) 9.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.