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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:114.4 nTPM
HPA:114.4 nTPM
GTEx:83.8 nTPM
FANTOM5:59.1 Scaled Tags Per Million
Pig:28.5 nTPM
Mouse:18.8 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 114.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 111.4
1870 Female, age 42, unknown 116.2
2586 Male, age 75, left hemisphere 114.2
2828 Female, age 72, unknown 113.4
1833 Male, age 53, unknown 112.0
2411 Female, age 72, unknown 111.6
2019 Male, age 18, unknown 111.1
1827 Male, age 72, unknown 110.9
1830 Male, age 51, unknown 110.2
2666 Male, age 74, left hemisphere 107.5
2219 Male, age 76, both hemispheres 107.4
Dorsal raphe nucleus
nTPM: 112.5
2016 Female, age 72, unknown 113.5
1828 Male, age 53, unknown 112.8
2298 Female, age 72, unknown 112.7
2047 Male, age 72, unknown 112.0
2750 Male, age 76, both hemispheres 111.6
Inferior colliculus
nTPM: 114.4
2097 Female, age 72, unknown 116.6
1848 Female, age 42, unknown 114.9
2849 Male, age 72, unknown 113.1
1890 Male, age 53, unknown 112.8
Median raphe nucleus
nTPM: 107.5
2220 Male, age 76, midline 107.5
Pedunculopontine tegmental nucleus
nTPM: 109.8
2334 Male, age 80, both hemispheres 111.6
1921 Female, age 85, both hemispheres 111.3
2338 Male, age 61, both hemispheres 106.5
Periaquaductal grey, anterior
nTPM: 111.3
2502 Female, age 75, unknown 114.4
1795 Male, age 51, unknown 110.8
1947 Male, age 18, unknown 108.8
Periaquaductal grey, dorsal
nTPM: 112.3
1840 Male, age 53, unknown 113.7
2464 Female, age 72, unknown 113.2
2850 Male, age 76, both hemispheres 111.6
1831 Male, age 72, unknown 110.6
Periaquaductal grey, lateral
nTPM: 110.8
2140 Male, age 76, both hemispheres 113.1
2053 Male, age 18, unknown 112.2
2272 Male, age 74, both hemispheres 107.1
Pretectal area
nTPM: 112.2
1817 Female, age 42, unknown 114.3
2667 Female, age 75, unknown 113.5
1816 Male, age 51, unknown 113.4
2825 Male, age 18, unknown 112.7
2273 Male, age 74, both hemispheres 112.5
1944 Female, age 72, unknown 112.3
1815 Male, age 53, unknown 112.1
2224 Female, age 72, unknown 111.9
2316 Male, age 76, right hemisphere 111.9
2007 Male, age 72, unknown 109.9
2407 Male, age 75, both hemispheres 109.2
Red nucleus
nTPM: 114.0
1821 Female, age 72, unknown 120.2
2503 Female, age 72, unknown 117.0
2769 Male, age 72, unknown 115.7
1904 Male, age 53, unknown 115.4
2227 Male, age 72, unknown 115.4
1954 Female, age 42, unknown 115.0
2823 Male, age 76, right hemisphere 115.0
1865 Male, age 51, unknown 114.9
2725 Female, age 75, unknown 111.8
2785 Male, age 18, unknown 111.6
2584 Male, age 75, left hemisphere 108.0
2588 Male, age 74, left hemisphere 107.9
Substantia nigra
nTPM: 114.0
2699 Male, age 18, unknown 116.9
1851 Male, age 51, unknown 115.5
2241 Male, age 72, unknown 115.0
1889 Female, age 72, unknown 114.4
2583 Male, age 75, right hemisphere 114.3
2665 Male, age 74, both hemispheres 113.9
2409 Female, age 72, unknown 113.2
1916 Female, age 42, unknown 113.1
2590 Female, age 75, unknown 112.8
1941 Male, age 53, unknown 111.2
Superior colliculus
nTPM: 112.5
1913 Female, age 42, unknown 114.7
1995 Male, age 72, unknown 114.3
2087 Female, age 72, unknown 113.7
1796 Male, age 53, unknown 112.7
2261 Male, age 18, unknown 112.5
1839 Male, age 51, unknown 112.3
2664 Male, age 75, both hemispheres 111.7
1895 Male, age 76, right hemisphere 111.3
2587 Male, age 74, left hemisphere 110.8
2668 Female, age 75, unknown 110.8
Ventral tegmental area
nTPM: 112.9
2410 Female, age 72, unknown 114.9
2223 Female, age 72, unknown 114.6
1915 Female, age 42, unknown 114.4
2021 Male, age 53, unknown 112.5
1942 Male, age 51, unknown 110.7
2218 Male, age 76, both hemispheres 110.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.8
Samples: 139

Max nTPM: 234.5
Min nTPM: 23.8
Std nTPM: 34.5
Median nTPM: 76.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 234.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 234.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 207.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 188.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 185.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 164.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 147.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 146.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 140.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 133.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 127.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.1
FF:10158-103A5 76 years, female 59.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.5
Pig sample Sample description nTPM
Midbrain
nTPM: 28.5
Samples: 4

Max nTPM: 53.3
Min nTPM: 16.5
Sample A Female 53.3
Sample B Female 25.8
Sample C Male 18.5
Sample D Male 16.5
Periaqueductal gray
nTPM: 24.7
Samples: 3

Max nTPM: 26.1
Min nTPM: 22.8
Sample B Female 25.2
Sample C Male 26.1
Sample D Male 22.8
Substantia nigra
nTPM: 26.3
Samples: 4

Max nTPM: 31.0
Min nTPM: 21.0
Sample A Female 31.0
Sample B Female 26.5
Sample C Male 21.0
Sample D Male 26.8
Superior colliculi
nTPM: 23.5
Samples: 4

Max nTPM: 27.8
Min nTPM: 20.5
Sample A Female 27.8
Sample B Female 23.8
Sample C Male 20.5
Sample D Male 21.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 21.7
Min nTPM: 15.9
Sample A Male 21.7
Sample B Male 15.9
Sample C Female 16.5
Sample D Female 21.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
76097729 Antisense, RP_060626_01_E01, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.