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PRPF6
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:37.4 nTPM
HPA:37.4 nTPM
GTEx:38.9 nTPM
FANTOM5:141.3 Scaled Tags Per Million
Pig:11.8 nTPM
Mouse:42.1 nTPM
Allen mouse:3.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA047106
Glial cells Not detected
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.1
2481 Female, age 94, left hemisphere 38.1
2288 Male, age 75, left hemisphere 35.7
1781 Male, age 74, unknown 34.4
2290 Female, age 72, unknown 33.5
1854 Male, age 80, left hemisphere 33.0
2289 Male, age 61, right hemisphere 32.8
1857 Female, age 85, left hemisphere 32.7
2846 Female, age 79, unknown 32.5
Claustrum
nTPM: 33.9
2198 Male, age 80, both hemispheres 35.9
2292 Female, age 85, both hemispheres 35.7
2491 Male, age 75, both hemispheres 35.7
1956 Male, age 74, unknown 34.3
2284 Female, age 91, both hemispheres 33.7
2196 Female, age 79, unknown 33.4
2568 Male, age 61, both hemispheres 32.9
2392 Female, age 94, both hemispheres 31.7
2645 Female, age 72, unknown 31.5
Globus pallidus, externus
nTPM: 36.8
2646 Male, age 61, right hemisphere 39.2
1996 Male, age 80, right hemisphere 36.8
2567 Female, age 72, unknown 36.2
2772 Female, age 79, unknown 36.1
2395 Male, age 75, both hemispheres 35.5
Globus pallidus, internus
nTPM: 37.4
2778 Female, age 91, both hemispheres 40.5
2287 Male, age 75, right hemisphere 39.5
2483 Female, age 94, right hemisphere 39.0
2566 Female, age 72, unknown 37.7
2111 Female, age 85, right hemisphere 35.8
2037 Male, age 80, right hemisphere 34.9
1818 Male, age 74, unknown 34.8
Nucleus accumbens
nTPM: 35.0
2391 Female, age 94, left hemisphere 39.9
2286 Male, age 75, left hemisphere 35.4
1783 Male, age 74, unknown 34.7
2824 Male, age 61, right hemisphere 34.7
1856 Female, age 91, right hemisphere 34.0
2698 Female, age 72, unknown 34.0
1806 Female, age 85, left hemisphere 33.9
2732 Male, age 80, right hemisphere 33.5
Nucleus basalis of Meynert
nTPM: 33.7
2569 Male, age 61, both hemispheres 37.8
2821 Male, age 75, both hemispheres 32.7
2393 Male, age 80, right hemisphere 32.4
2484 Female, age 94, left hemisphere 32.1
Nucleus of the diagonal band
nTPM: 32.6
2775 Male, age 80, right hemisphere 33.9
1979 Male, age 74, unknown 33.2
1812 Female, age 91, both hemispheres 32.7
2029 Male, age 61, right hemisphere 31.7
2195 Female, age 85, both hemispheres 31.4
Olfactory tubercle
nTPM: 32.2
1998 Female, age 91, both hemispheres 33.5
1846 Male, age 80, right hemisphere 33.0
2487 Female, age 94, left hemisphere 31.7
2856 Male, age 75, right hemisphere 30.7
Putamen
nTPM: 34.0
2482 Female, age 94, left hemisphere 38.2
2647 Male, age 75, left hemisphere 34.5
1838 Male, age 80, right hemisphere 34.4
1937 Female, age 91, right hemisphere 34.3
1829 Male, age 74, unknown 33.2
2466 Female, age 79, unknown 32.4
2489 Female, age 72, unknown 31.4
Septal nuclei
nTPM: 31.3
1960 Male, age 74, unknown 32.7
2629 Female, age 94, right hemisphere 32.4
2031 Female, age 72, unknown 32.1
2059 Female, age 85, both hemispheres 32.1
2199 Male, age 80, right hemisphere 31.4
2009 Female, age 91, both hemispheres 30.3
2394 Male, age 61, left hemisphere 27.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 38.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 37.1
Samples: 246

Max nTPM: 56.9
Min nTPM: 22.8
Std nTPM: 5.8
Median nTPM: 36.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 56.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 55.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 55.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 54.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 53.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 53.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 52.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 51.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 50.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 49.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 49.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 38.4
Samples: 246

Max nTPM: 69.8
Min nTPM: 24.2
Std nTPM: 6.4
Median nTPM: 37.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 69.8
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 60.9
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 57.7
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 56.8
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 54.3
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 53.2
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 52.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 51.4
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 50.5
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 50.3
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 50.3
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Brain - Putamen (basal ganglia)
Average nTPM: 38.9
Samples: 205

Max nTPM: 88.7
Min nTPM: 26.6
Std nTPM: 7.3
Median nTPM: 37.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 88.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 63.2
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 57.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 55.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 55.3
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 54.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 54.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 53.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 52.4
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 52.2
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 52.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 141.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 133.2
FF:10164-103B2 76 years, female 133.2
Globus pallidus
Scaled Tags Per Million: 128.8
FF:10175-103C4 60 years, female 134.1
FF:10161-103A8 76 years, female 123.5
Nucleus accumbens
Scaled Tags Per Million: 141.3
FF:10037-101F1 23-56 years, mixed 141.3
Putamen
Scaled Tags Per Million: 123.8
FF:10176-103C5 60 years, female 123.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.8
Pig sample Sample description nTPM
Caudate
nTPM: 10.8
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.6
Sample A Female 9.6
Sample B Female 11.4
Sample C Male 11.8
Sample D Male 10.3
Putamen
nTPM: 11.6
Samples: 4

Max nTPM: 12.6
Min nTPM: 9.5
Sample A Female 12.4
Sample B Female 9.5
Sample C Male 11.9
Sample D Male 12.6
Septum
nTPM: 11.7
Samples: 4

Max nTPM: 12.8
Min nTPM: 10.6
Sample A Female 12.1
Sample B Female 10.6
Sample C Male 12.8
Sample D Male 11.3
Ventral pallidum
nTPM: 11.8
Samples: 4

Max nTPM: 13.3
Min nTPM: 9.9
Sample A Female 9.9
Sample B Female 11.8
Sample C Male 13.3
Sample D Male 12.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 42.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 42.2
Samples: 4

Max nTPM: 45.0
Min nTPM: 39.1
Sample A Male 43.2
Sample B Male 45.0
Sample C Female 39.1
Sample D Female 41.3
Septum
nTPM: 40.8
Samples: 4

Max nTPM: 41.9
Min nTPM: 39.5
Sample A Male 41.3
Sample B Male 40.6
Sample C Female 39.5
Sample D Female 41.9
Ventral forebrain
nTPM: 39.4
Samples: 4

Max nTPM: 43.3
Min nTPM: 37.1
Sample A Male 38.0
Sample B Male 43.3
Sample C Female 37.1
Sample D Female 39.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.9
119683 Antisense, RP_040507_01_B10, Mouse strain C57BL/6J (56 days, male) 3.2
67850946 Antisense, RP_041018_01_A05, Mouse strain C57BL/6J (56 days, male) 2.6
Pallidum
Expression energy: 3.1
119683 Antisense, RP_040507_01_B10, Mouse strain C57BL/6J (56 days, male) 3.8
67850946 Antisense, RP_041018_01_A05, Mouse strain C57BL/6J (56 days, male) 2.4

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.