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PRPF6
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:32.9 nTPM
HPA:32.9 nTPM
GTEx:33.1 nTPM
FANTOM5:116.5 Scaled Tags Per Million
Pig:12.3 nTPM
Mouse:38.7 nTPM
Allen mouse:6.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA047106
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 32.9
Sample id Sample description nTPM
Hippocampus
nTPM: 30.4
2529 Female, age 94, left hemisphere 33.7
1898 Male, age 80, left hemisphere 31.5
2148 Female, age 91, left hemisphere 30.1
2621 Female, age 67, right hemisphere 30.1
1911 Female, age 85, right hemisphere 29.2
1855 Male, age 76, left hemisphere 27.9
Dentate gyrus
nTPM: 30.0
2528 Male, age 74, both hemispheres 31.6
2010 Male, age 76, both hemispheres 31.3
2530 Female, age 94, left hemisphere 30.6
2246 Female, age 85, both hemispheres 29.5
1927 Female, age 91, both hemispheres 28.9
2531 Female, age 67, both hemispheres 28.5
Entorhinal gyrus
nTPM: 32.9
2764 Male, age 80, right hemisphere 36.5
2117 Female, age 91, right hemisphere 33.7
1787 Male, age 76, left hemisphere 32.5
1938 Female, age 85, left hemisphere 32.5
2686 Male, age 75, right hemisphere 31.7
2613 Female, age 94, left hemisphere 30.6
Hippocampus, CA1
nTPM: 31.3
2749 Male, age 80, left hemisphere 34.2
2527 Male, age 74, both hemispheres 32.2
2082 Female, age 91, right hemisphere 31.9
1873 Female, age 85, both hemispheres 30.9
2045 Male, age 76, both hemispheres 27.2
Hippocampus, CA2
nTPM: 31.6
2113 Female, age 91, right hemisphere 32.6
2249 Male, age 74, both hemispheres 32.4
1963 Male, age 80, left hemisphere 31.9
1940 Female, age 85, left hemisphere 31.5
2437 Female, age 94, left hemisphere 30.5
1892 Male, age 76, both hemispheres 30.4
Hippocampus, CA3
nTPM: 30.2
2137 Male, age 80, left hemisphere 31.8
2436 Male, age 74, both hemispheres 31.5
1867 Male, age 76, both hemispheres 31.2
2620 Female, age 94, left hemisphere 30.1
1891 Female, age 85, both hemispheres 30.0
2861 Female, age 67, both hemispheres 26.6
Parahippocampal cortex
nTPM: 30.9
1850 Male, age 80, both hemispheres 32.9
1990 Female, age 91, right hemisphere 32.5
2532 Female, age 72, left hemisphere 32.4
1933 Female, age 85, both hemispheres 31.5
2692 Male, age 74, both hemispheres 30.9
2018 Male, age 76, both hemispheres 30.8
2245 Female, age 91, both hemispheres 30.6
2622 Female, age 67, right hemisphere 30.0
2250 Female, age 67, right hemisphere 29.6
2693 Female, age 94, both hemispheres 27.4
Perirhinal gyrus
nTPM: 32.1
1794 Male, age 80, right hemisphere 35.5
1841 Female, age 85, right hemisphere 32.8
1847 Female, age 91, left hemisphere 31.8
2848 Male, age 76, right hemisphere 30.3
2521 Female, age 94, right hemisphere 30.2
Subiculum
nTPM: 31.4
2619 Male, age 74, both hemispheres 32.8
1977 Female, age 85, both hemispheres 32.5
1901 Male, age 80, both hemispheres 32.1
2042 Male, age 76, both hemispheres 31.1
2438 Female, age 94, left hemisphere 30.9
2729 Female, age 91, right hemisphere 29.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 33.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.1
Samples: 197

Max nTPM: 63.8
Min nTPM: 19.2
Std nTPM: 5.7
Median nTPM: 32.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 63.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 51.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 47.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 47.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 47.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 46.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 46.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 45.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 45.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 45.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 43.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 116.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 116.5
FF:10169-103B7 60 years, female 119.2
FF:10153-102I9 76 years, female 113.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 12.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 12.4
Samples: 4

Max nTPM: 14.9
Min nTPM: 10.4
Sample A Female 14.9
Sample B Female 12.4
Sample C Male 11.7
Sample D Male 10.4
Entorhinal cortex
nTPM: 12.0
Samples: 4

Max nTPM: 13.3
Min nTPM: 10.8
Sample A Female 13.3
Sample B Female 12.4
Sample C Male 11.5
Sample D Male 10.8
Subiculum
nTPM: 11.4
Samples: 4

Max nTPM: 14.4
Min nTPM: 10.2
Sample A Female 14.4
Sample B Female 10.2
Sample C Male 10.9
Sample D Male 10.2
Ventral hippocampus
nTPM: 12.2
Samples: 4

Max nTPM: 14.8
Min nTPM: 9.4
Sample A Female 11.7
Sample B Female 9.4
Sample C Male 14.8
Sample D Male 13.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 38.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 37.0
Samples: 4

Max nTPM: 41.7
Min nTPM: 33.9
Sample A Male 33.9
Sample B Male 36.8
Sample C Female 35.4
Sample D Female 41.7
Hippocampal formation
nTPM: 38.8
Samples: 4

Max nTPM: 41.0
Min nTPM: 37.3
Sample A Male 37.5
Sample B Male 41.0
Sample C Female 39.2
Sample D Female 37.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.4
67850946 Antisense, RP_041018_01_A05, Mouse strain C57BL/6J (56 days, male) 7.5
119683 Antisense, RP_040507_01_B10, Mouse strain C57BL/6J (56 days, male) 5.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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