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PRPF6
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.5 nTPM
HPA:35.5 nTPM
GTEx:36.1 nTPM
FANTOM5:111.7 Scaled Tags Per Million
Pig:15.5 nTPM
Mouse:38.1 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.9
2411 Female, age 72, unknown 36.0
1870 Female, age 42, unknown 34.7
2219 Male, age 76, both hemispheres 34.7
1833 Male, age 53, unknown 34.5
1827 Male, age 72, unknown 34.2
1830 Male, age 51, unknown 34.2
2586 Male, age 75, left hemisphere 33.8
2828 Female, age 72, unknown 33.2
2019 Male, age 18, unknown 32.7
2666 Male, age 74, left hemisphere 30.7
Dorsal raphe nucleus
nTPM: 33.3
2750 Male, age 76, both hemispheres 34.4
2298 Female, age 72, unknown 34.2
2047 Male, age 72, unknown 33.0
1828 Male, age 53, unknown 32.4
2016 Female, age 72, unknown 32.2
Inferior colliculus
nTPM: 31.9
2849 Male, age 72, unknown 33.1
1848 Female, age 42, unknown 32.3
1890 Male, age 53, unknown 31.4
2097 Female, age 72, unknown 30.6
Median raphe nucleus
nTPM: 35.5
2220 Male, age 76, midline 35.5
Pedunculopontine tegmental nucleus
nTPM: 32.9
1921 Female, age 85, both hemispheres 33.2
2334 Male, age 80, both hemispheres 32.8
2338 Male, age 61, both hemispheres 32.8
Periaquaductal grey, anterior
nTPM: 33.0
1947 Male, age 18, unknown 34.1
2502 Female, age 75, unknown 32.6
1795 Male, age 51, unknown 32.1
Periaquaductal grey, dorsal
nTPM: 32.1
1840 Male, age 53, unknown 32.8
2464 Female, age 72, unknown 32.5
2850 Male, age 76, both hemispheres 32.0
1831 Male, age 72, unknown 31.2
Periaquaductal grey, lateral
nTPM: 33.4
2272 Male, age 74, both hemispheres 34.7
2140 Male, age 76, both hemispheres 34.6
2053 Male, age 18, unknown 30.9
Pretectal area
nTPM: 33.3
2667 Female, age 75, unknown 37.1
2316 Male, age 76, right hemisphere 34.8
2825 Male, age 18, unknown 34.4
2273 Male, age 74, both hemispheres 33.6
2007 Male, age 72, unknown 33.0
1817 Female, age 42, unknown 32.9
1815 Male, age 53, unknown 32.7
2407 Male, age 75, both hemispheres 32.3
2224 Female, age 72, unknown 32.2
1816 Male, age 51, unknown 31.5
1944 Female, age 72, unknown 31.5
Red nucleus
nTPM: 34.5
2503 Female, age 72, unknown 36.4
1865 Male, age 51, unknown 35.3
1821 Female, age 72, unknown 35.2
1904 Male, age 53, unknown 35.2
2588 Male, age 74, left hemisphere 34.8
2769 Male, age 72, unknown 34.7
2227 Male, age 72, unknown 34.6
2725 Female, age 75, unknown 34.1
2584 Male, age 75, left hemisphere 33.5
2785 Male, age 18, unknown 33.5
1954 Female, age 42, unknown 33.4
2823 Male, age 76, right hemisphere 33.2
Substantia nigra
nTPM: 32.7
2699 Male, age 18, unknown 35.1
1916 Female, age 42, unknown 34.5
1851 Male, age 51, unknown 34.2
2590 Female, age 75, unknown 33.4
2409 Female, age 72, unknown 33.0
1889 Female, age 72, unknown 32.5
1941 Male, age 53, unknown 32.2
2583 Male, age 75, right hemisphere 31.1
2241 Male, age 72, unknown 30.4
2665 Male, age 74, both hemispheres 30.3
Superior colliculus
nTPM: 32.5
1913 Female, age 42, unknown 34.9
1995 Male, age 72, unknown 34.2
1796 Male, age 53, unknown 34.0
1895 Male, age 76, right hemisphere 33.0
1839 Male, age 51, unknown 32.9
2261 Male, age 18, unknown 32.3
2587 Male, age 74, left hemisphere 32.1
2087 Female, age 72, unknown 31.6
2664 Male, age 75, both hemispheres 30.7
2668 Female, age 75, unknown 29.0
Ventral tegmental area
nTPM: 33.0
2223 Female, age 72, unknown 33.7
2410 Female, age 72, unknown 33.7
1915 Female, age 42, unknown 33.2
2218 Male, age 76, both hemispheres 33.1
1942 Male, age 51, unknown 32.5
2021 Male, age 53, unknown 31.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.1
Samples: 139

Max nTPM: 63.6
Min nTPM: 23.6
Std nTPM: 6.5
Median nTPM: 34.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 63.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 57.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 53.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 52.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 49.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 49.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 47.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 47.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 47.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 47.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 46.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.7
FF:10158-103A5 76 years, female 111.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.5
Pig sample Sample description nTPM
Midbrain
nTPM: 14.3
Samples: 4

Max nTPM: 17.2
Min nTPM: 12.0
Sample A Female 17.2
Sample B Female 12.0
Sample C Male 15.1
Sample D Male 13.0
Periaqueductal gray
nTPM: 11.9
Samples: 3

Max nTPM: 13.0
Min nTPM: 10.8
Sample B Female 11.9
Sample C Male 13.0
Sample D Male 10.8
Substantia nigra
nTPM: 13.8
Samples: 4

Max nTPM: 14.8
Min nTPM: 12.3
Sample A Female 14.8
Sample B Female 12.3
Sample C Male 14.8
Sample D Male 13.3
Superior colliculi
nTPM: 15.5
Samples: 4

Max nTPM: 16.4
Min nTPM: 14.8
Sample A Female 14.9
Sample B Female 15.9
Sample C Male 16.4
Sample D Male 14.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.1
Samples: 4

Max nTPM: 40.8
Min nTPM: 36.2
Sample A Male 37.1
Sample B Male 36.2
Sample C Female 40.8
Sample D Female 38.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
67850946 Antisense, RP_041018_01_A05, Mouse strain C57BL/6J (56 days, male) 6.1
119683 Antisense, RP_040507_01_B10, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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