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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:54.4 nTPM
HPA:54.4 nTPM
GTEx:57.1 nTPM
FANTOM5:112.3 Scaled Tags Per Million
Pig:46.0 nTPM
Mouse:65.7 nTPM
Allen mouse:2.9 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB046446
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.8
2290 Female, age 72, unknown 46.1
1857 Female, age 85, left hemisphere 45.8
1781 Male, age 74, unknown 45.7
2846 Female, age 79, unknown 43.6
1854 Male, age 80, left hemisphere 42.4
2289 Male, age 61, right hemisphere 37.9
2481 Female, age 94, left hemisphere 36.6
2288 Male, age 75, left hemisphere 36.1
Claustrum
nTPM: 53.1
2568 Male, age 61, both hemispheres 63.9
2645 Female, age 72, unknown 60.2
2198 Male, age 80, both hemispheres 56.8
2284 Female, age 91, both hemispheres 56.5
2491 Male, age 75, both hemispheres 55.9
1956 Male, age 74, unknown 49.0
2392 Female, age 94, both hemispheres 46.9
2196 Female, age 79, unknown 46.8
2292 Female, age 85, both hemispheres 42.1
Globus pallidus, externus
nTPM: 38.2
2567 Female, age 72, unknown 40.9
2646 Male, age 61, right hemisphere 39.6
2772 Female, age 79, unknown 38.9
1996 Male, age 80, right hemisphere 36.7
2395 Male, age 75, both hemispheres 34.9
Globus pallidus, internus
nTPM: 36.6
2287 Male, age 75, right hemisphere 40.4
2483 Female, age 94, right hemisphere 38.7
2566 Female, age 72, unknown 36.9
2778 Female, age 91, both hemispheres 35.8
1818 Male, age 74, unknown 35.6
2037 Male, age 80, right hemisphere 34.7
2111 Female, age 85, right hemisphere 34.4
Nucleus accumbens
nTPM: 42.8
1783 Male, age 74, unknown 53.0
1856 Female, age 91, right hemisphere 48.2
2824 Male, age 61, right hemisphere 45.8
1806 Female, age 85, left hemisphere 45.6
2698 Female, age 72, unknown 41.5
2286 Male, age 75, left hemisphere 39.5
2732 Male, age 80, right hemisphere 36.6
2391 Female, age 94, left hemisphere 32.4
Nucleus basalis of Meynert
nTPM: 38.9
2569 Male, age 61, both hemispheres 41.3
2484 Female, age 94, left hemisphere 40.0
2393 Male, age 80, right hemisphere 38.2
2821 Male, age 75, both hemispheres 36.1
Nucleus of the diagonal band
nTPM: 53.9
2029 Male, age 61, right hemisphere 61.2
2775 Male, age 80, right hemisphere 58.9
1812 Female, age 91, both hemispheres 53.5
2195 Female, age 85, both hemispheres 53.0
1979 Male, age 74, unknown 43.1
Olfactory tubercle
nTPM: 54.4
2487 Female, age 94, left hemisphere 57.9
1998 Female, age 91, both hemispheres 56.3
1846 Male, age 80, right hemisphere 52.9
2856 Male, age 75, right hemisphere 50.3
Putamen
nTPM: 42.2
2647 Male, age 75, left hemisphere 48.0
1838 Male, age 80, right hemisphere 43.7
2466 Female, age 79, unknown 43.3
1829 Male, age 74, unknown 41.8
2489 Female, age 72, unknown 41.6
1937 Female, age 91, right hemisphere 41.2
2482 Female, age 94, left hemisphere 35.8
Septal nuclei
nTPM: 48.9
1960 Male, age 74, unknown 59.1
2031 Female, age 72, unknown 53.0
2059 Female, age 85, both hemispheres 50.1
2629 Female, age 94, right hemisphere 49.5
2009 Female, age 91, both hemispheres 47.8
2394 Male, age 61, left hemisphere 45.6
2199 Male, age 80, right hemisphere 37.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 57.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 48.5
Samples: 246

Max nTPM: 84.0
Min nTPM: 24.3
Std nTPM: 9.4
Median nTPM: 47.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 84.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 75.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 73.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 71.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 70.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 70.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 70.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 69.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 67.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 67.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 66.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 57.1
Samples: 246

Max nTPM: 89.0
Min nTPM: 29.0
Std nTPM: 11.4
Median nTPM: 57.6
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 89.0
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 86.6
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 85.3
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 84.5
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 81.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 80.2
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 80.0
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 78.6
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 78.6
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 78.4
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 78.1
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Brain - Putamen (basal ganglia)
Average nTPM: 47.0
Samples: 205

Max nTPM: 68.1
Min nTPM: 24.4
Std nTPM: 7.5
Median nTPM: 46.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 68.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 67.4
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 66.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 66.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 65.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 63.2
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 61.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 61.0
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 60.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 59.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 59.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 112.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 112.3
FF:10164-103B2 76 years, female 112.3
Globus pallidus
Scaled Tags Per Million: 82.0
FF:10175-103C4 60 years, female 86.0
FF:10161-103A8 76 years, female 78.0
Nucleus accumbens
Scaled Tags Per Million: 110.0
FF:10037-101F1 23-56 years, mixed 110.0
Putamen
Scaled Tags Per Million: 106.5
FF:10176-103C5 60 years, female 106.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 46.0
Pig sample Sample description nTPM
Caudate
nTPM: 43.0
Samples: 4

Max nTPM: 50.6
Min nTPM: 33.6
Sample A Female 33.6
Sample B Female 45.3
Sample C Male 50.6
Sample D Male 42.4
Putamen
nTPM: 46.0
Samples: 4

Max nTPM: 54.3
Min nTPM: 36.6
Sample A Female 36.6
Sample B Female 42.2
Sample C Male 54.3
Sample D Male 50.7
Septum
nTPM: 42.4
Samples: 4

Max nTPM: 43.5
Min nTPM: 40.9
Sample A Female 43.0
Sample B Female 43.5
Sample C Male 42.2
Sample D Male 40.9
Ventral pallidum
nTPM: 43.6
Samples: 4

Max nTPM: 55.0
Min nTPM: 35.2
Sample A Female 35.2
Sample B Female 44.0
Sample C Male 55.0
Sample D Male 40.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 65.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 59.5
Samples: 4

Max nTPM: 64.2
Min nTPM: 54.9
Sample A Male 54.9
Sample B Male 56.5
Sample C Female 64.2
Sample D Female 62.4
Septum
nTPM: 59.0
Samples: 4

Max nTPM: 61.2
Min nTPM: 56.6
Sample A Male 60.9
Sample B Male 61.2
Sample C Female 57.3
Sample D Female 56.6
Ventral forebrain
nTPM: 65.7
Samples: 4

Max nTPM: 70.1
Min nTPM: 61.1
Sample A Male 66.5
Sample B Male 65.0
Sample C Female 61.1
Sample D Female 70.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.5
513243 Antisense, RP_040810_01_D11, Mouse strain C57BL/6J (56 days, male) 2.5
Pallidum
Expression energy: 2.9
513243 Antisense, RP_040810_01_D11, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.