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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.4 nTPM
HPA:45.4 nTPM
GTEx:40.3 nTPM
FANTOM5:73.7 Scaled Tags Per Million
Pig:52.0 nTPM
Mouse:59.3 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.1
2586 Male, age 75, left hemisphere 54.8
2828 Female, age 72, unknown 47.6
2666 Male, age 74, left hemisphere 46.7
1827 Male, age 72, unknown 43.4
2019 Male, age 18, unknown 43.1
2219 Male, age 76, both hemispheres 37.5
2411 Female, age 72, unknown 35.7
1870 Female, age 42, unknown 35.3
1833 Male, age 53, unknown 34.1
1830 Male, age 51, unknown 32.6
Dorsal raphe nucleus
nTPM: 37.0
1828 Male, age 53, unknown 38.6
2298 Female, age 72, unknown 38.2
2047 Male, age 72, unknown 37.9
2750 Male, age 76, both hemispheres 35.5
2016 Female, age 72, unknown 35.0
Inferior colliculus
nTPM: 37.9
2097 Female, age 72, unknown 42.5
1890 Male, age 53, unknown 37.8
1848 Female, age 42, unknown 37.3
2849 Male, age 72, unknown 33.8
Median raphe nucleus
nTPM: 37.5
2220 Male, age 76, midline 37.5
Pedunculopontine tegmental nucleus
nTPM: 33.5
1921 Female, age 85, both hemispheres 36.9
2334 Male, age 80, both hemispheres 33.6
2338 Male, age 61, both hemispheres 30.1
Periaquaductal grey, anterior
nTPM: 43.3
1795 Male, age 51, unknown 45.7
2502 Female, age 75, unknown 44.0
1947 Male, age 18, unknown 40.4
Periaquaductal grey, dorsal
nTPM: 35.8
1831 Male, age 72, unknown 41.1
1840 Male, age 53, unknown 35.4
2464 Female, age 72, unknown 34.4
2850 Male, age 76, both hemispheres 32.4
Periaquaductal grey, lateral
nTPM: 34.4
2053 Male, age 18, unknown 39.6
2140 Male, age 76, both hemispheres 31.8
2272 Male, age 74, both hemispheres 31.8
Pretectal area
nTPM: 45.4
1816 Male, age 51, unknown 60.3
1944 Female, age 72, unknown 55.1
1817 Female, age 42, unknown 54.0
2007 Male, age 72, unknown 50.8
1815 Male, age 53, unknown 47.9
2667 Female, age 75, unknown 44.7
2407 Male, age 75, both hemispheres 44.5
2825 Male, age 18, unknown 37.0
2224 Female, age 72, unknown 36.0
2316 Male, age 76, right hemisphere 35.4
2273 Male, age 74, both hemispheres 34.1
Red nucleus
nTPM: 39.5
2584 Male, age 75, left hemisphere 47.4
2588 Male, age 74, left hemisphere 44.9
2785 Male, age 18, unknown 41.9
1821 Female, age 72, unknown 39.1
1904 Male, age 53, unknown 39.0
2725 Female, age 75, unknown 38.9
1865 Male, age 51, unknown 38.2
2503 Female, age 72, unknown 38.1
1954 Female, age 42, unknown 38.0
2769 Male, age 72, unknown 37.6
2227 Male, age 72, unknown 36.2
2823 Male, age 76, right hemisphere 34.9
Substantia nigra
nTPM: 44.7
1916 Female, age 42, unknown 50.7
2665 Male, age 74, both hemispheres 49.3
1941 Male, age 53, unknown 47.3
1851 Male, age 51, unknown 47.2
1889 Female, age 72, unknown 46.8
2583 Male, age 75, right hemisphere 46.4
2241 Male, age 72, unknown 41.8
2590 Female, age 75, unknown 41.1
2699 Male, age 18, unknown 39.2
2409 Female, age 72, unknown 37.2
Superior colliculus
nTPM: 43.7
2087 Female, age 72, unknown 54.0
2664 Male, age 75, both hemispheres 54.0
2261 Male, age 18, unknown 48.3
2668 Female, age 75, unknown 46.5
1796 Male, age 53, unknown 45.6
1995 Male, age 72, unknown 40.6
1913 Female, age 42, unknown 39.5
1895 Male, age 76, right hemisphere 37.3
1839 Male, age 51, unknown 36.0
2587 Male, age 74, left hemisphere 35.6
Ventral tegmental area
nTPM: 41.1
1915 Female, age 42, unknown 43.2
2410 Female, age 72, unknown 43.2
1942 Male, age 51, unknown 41.8
2218 Male, age 76, both hemispheres 41.4
2021 Male, age 53, unknown 39.4
2223 Female, age 72, unknown 37.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.3
Samples: 139

Max nTPM: 72.2
Min nTPM: 24.3
Std nTPM: 7.9
Median nTPM: 40.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 72.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 61.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 60.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 58.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 55.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 54.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 54.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 54.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 53.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 53.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 51.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.7
FF:10158-103A5 76 years, female 73.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.0
Pig sample Sample description nTPM
Midbrain
nTPM: 52.0
Samples: 4

Max nTPM: 78.6
Min nTPM: 37.0
Sample A Female 43.5
Sample B Female 37.0
Sample C Male 78.6
Sample D Male 48.9
Periaqueductal gray
nTPM: 32.9
Samples: 3

Max nTPM: 35.7
Min nTPM: 27.8
Sample B Female 35.1
Sample C Male 35.7
Sample D Male 27.8
Substantia nigra
nTPM: 39.7
Samples: 4

Max nTPM: 47.7
Min nTPM: 31.1
Sample A Female 47.7
Sample B Female 31.1
Sample C Male 46.6
Sample D Male 33.2
Superior colliculi
nTPM: 47.5
Samples: 4

Max nTPM: 61.3
Min nTPM: 35.3
Sample A Female 42.9
Sample B Female 35.3
Sample C Male 61.3
Sample D Male 50.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.3
Samples: 4

Max nTPM: 62.7
Min nTPM: 54.7
Sample A Male 54.7
Sample B Male 57.6
Sample C Female 62.7
Sample D Female 62.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
513243 Antisense, RP_040810_01_D11, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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