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PDAP1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:36.2 nTPM
HPA:36.2 nTPM
GTEx:26.3 nTPM
FANTOM5:115.3 Scaled Tags Per Million
Pig:63.1 nTPM
Mouse:38.3 nTPM
Allen mouse:5.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA050294Antibody HPA060836Antibody CAB021103
Glial cells Not detectedNot detectedLow
Neuronal cells LowNot detectedMedium




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.2
2481 Female, age 94, left hemisphere 35.4
1781 Male, age 74, unknown 34.0
2846 Female, age 79, unknown 33.2
2288 Male, age 75, left hemisphere 33.1
2289 Male, age 61, right hemisphere 32.8
2290 Female, age 72, unknown 32.7
1854 Male, age 80, left hemisphere 32.5
1857 Female, age 85, left hemisphere 32.2
Claustrum
nTPM: 34.0
2568 Male, age 61, both hemispheres 34.7
2645 Female, age 72, unknown 34.4
2292 Female, age 85, both hemispheres 34.3
2198 Male, age 80, both hemispheres 34.0
2284 Female, age 91, both hemispheres 34.0
1956 Male, age 74, unknown 33.8
2491 Male, age 75, both hemispheres 33.8
2392 Female, age 94, both hemispheres 33.5
2196 Female, age 79, unknown 33.0
Globus pallidus, externus
nTPM: 36.2
2646 Male, age 61, right hemisphere 36.7
2772 Female, age 79, unknown 36.4
2395 Male, age 75, both hemispheres 36.3
1996 Male, age 80, right hemisphere 36.1
2567 Female, age 72, unknown 35.5
Globus pallidus, internus
nTPM: 36.1
2287 Male, age 75, right hemisphere 36.5
2483 Female, age 94, right hemisphere 36.4
2778 Female, age 91, both hemispheres 36.4
1818 Male, age 74, unknown 36.2
2111 Female, age 85, right hemisphere 35.8
2037 Male, age 80, right hemisphere 35.6
2566 Female, age 72, unknown 35.6
Nucleus accumbens
nTPM: 33.0
2391 Female, age 94, left hemisphere 34.6
2286 Male, age 75, left hemisphere 33.9
2732 Male, age 80, right hemisphere 33.6
1783 Male, age 74, unknown 32.7
2698 Female, age 72, unknown 32.7
1806 Female, age 85, left hemisphere 32.3
2824 Male, age 61, right hemisphere 32.1
1856 Female, age 91, right hemisphere 31.9
Nucleus basalis of Meynert
nTPM: 34.5
2569 Male, age 61, both hemispheres 37.0
2484 Female, age 94, left hemisphere 34.0
2821 Male, age 75, both hemispheres 33.7
2393 Male, age 80, right hemisphere 33.3
Nucleus of the diagonal band
nTPM: 33.9
1812 Female, age 91, both hemispheres 35.2
2775 Male, age 80, right hemisphere 34.9
2195 Female, age 85, both hemispheres 33.8
1979 Male, age 74, unknown 33.5
2029 Male, age 61, right hemisphere 31.9
Olfactory tubercle
nTPM: 33.3
1846 Male, age 80, right hemisphere 33.6
2856 Male, age 75, right hemisphere 33.6
1998 Female, age 91, both hemispheres 33.2
2487 Female, age 94, left hemisphere 32.8
Putamen
nTPM: 33.4
2647 Male, age 75, left hemisphere 35.7
2482 Female, age 94, left hemisphere 34.6
2489 Female, age 72, unknown 33.6
1829 Male, age 74, unknown 33.4
1838 Male, age 80, right hemisphere 32.1
1937 Female, age 91, right hemisphere 32.1
2466 Female, age 79, unknown 32.1
Septal nuclei
nTPM: 33.4
2199 Male, age 80, right hemisphere 34.2
1960 Male, age 74, unknown 34.1
2394 Male, age 61, left hemisphere 34.0
2629 Female, age 94, right hemisphere 33.3
2031 Female, age 72, unknown 32.9
2059 Female, age 85, both hemispheres 32.8
2009 Female, age 91, both hemispheres 32.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 26.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.6
Samples: 246

Max nTPM: 35.6
Min nTPM: 11.8
Std nTPM: 3.8
Median nTPM: 23.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 35.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 35.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 33.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 32.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 32.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 32.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 32.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 32.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 31.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 31.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 31.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.1
Samples: 246

Max nTPM: 40.1
Min nTPM: 12.9
Std nTPM: 4.1
Median nTPM: 23.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 40.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 37.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 37.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 33.4
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 33.4
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 33.2
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 32.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 32.6
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 32.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 32.2
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 31.8
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Brain - Putamen (basal ganglia)
Average nTPM: 26.3
Samples: 205

Max nTPM: 58.2
Min nTPM: 12.6
Std nTPM: 4.6
Median nTPM: 25.8
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 58.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 40.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 37.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 36.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 35.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 34.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 34.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 34.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 34.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 33.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 33.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 115.3
FF:10164-103B2 76 years, female 115.3
Globus pallidus
Scaled Tags Per Million: 105.5
FF:10161-103A8 76 years, female 132.0
FF:10175-103C4 60 years, female 78.9
Nucleus accumbens
Scaled Tags Per Million: 98.0
FF:10037-101F1 23-56 years, mixed 98.0
Putamen
Scaled Tags Per Million: 110.9
FF:10176-103C5 60 years, female 110.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 63.1
Pig sample Sample description nTPM
Caudate
nTPM: 53.6
Samples: 4

Max nTPM: 62.8
Min nTPM: 47.3
Sample A Female 47.4
Sample B Female 56.7
Sample C Male 62.8
Sample D Male 47.3
Putamen
nTPM: 63.1
Samples: 4

Max nTPM: 72.5
Min nTPM: 56.6
Sample A Female 58.7
Sample B Female 56.6
Sample C Male 72.5
Sample D Male 64.5
Septum
nTPM: 56.9
Samples: 4

Max nTPM: 65.2
Min nTPM: 50.2
Sample A Female 50.2
Sample B Female 57.0
Sample C Male 55.3
Sample D Male 65.2
Ventral pallidum
nTPM: 54.9
Samples: 4

Max nTPM: 63.6
Min nTPM: 43.6
Sample A Female 43.6
Sample B Female 58.2
Sample C Male 63.6
Sample D Male 54.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 38.3
Samples: 4

Max nTPM: 40.3
Min nTPM: 35.6
Sample A Male 38.1
Sample B Male 39.3
Sample C Female 40.3
Sample D Female 35.6
Septum
nTPM: 36.9
Samples: 4

Max nTPM: 39.0
Min nTPM: 35.1
Sample A Male 36.0
Sample B Male 39.0
Sample C Female 37.3
Sample D Female 35.1
Ventral forebrain
nTPM: 36.9
Samples: 4

Max nTPM: 38.7
Min nTPM: 34.1
Sample A Male 36.1
Sample B Male 34.1
Sample C Female 38.7
Sample D Female 38.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.6
69782891 Antisense, RP_050505_04_A01, Mouse strain C57BL/6J (56 days, male) 5.6
Pallidum
Expression energy: 3.6
69782891 Antisense, RP_050505_04_A01, Mouse strain C57BL/6J (56 days, male) 3.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.