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PDAP1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.9 nTPM
HPA:37.9 nTPM
GTEx:29.3 nTPM
FANTOM5:103.7 Scaled Tags Per Million
Pig:70.8 nTPM
Mouse:31.8 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.2
2666 Male, age 74, left hemisphere 38.5
2586 Male, age 75, left hemisphere 38.0
1827 Male, age 72, unknown 36.4
2828 Female, age 72, unknown 36.4
1870 Female, age 42, unknown 36.0
2019 Male, age 18, unknown 35.9
1833 Male, age 53, unknown 35.8
2411 Female, age 72, unknown 35.1
1830 Male, age 51, unknown 35.0
2219 Male, age 76, both hemispheres 34.4
Dorsal raphe nucleus
nTPM: 35.4
1828 Male, age 53, unknown 36.9
2750 Male, age 76, both hemispheres 35.7
2047 Male, age 72, unknown 35.3
2298 Female, age 72, unknown 34.7
2016 Female, age 72, unknown 34.5
Inferior colliculus
nTPM: 35.0
2849 Male, age 72, unknown 36.3
1848 Female, age 42, unknown 34.8
1890 Male, age 53, unknown 34.8
2097 Female, age 72, unknown 34.2
Median raphe nucleus
nTPM: 35.6
2220 Male, age 76, midline 35.6
Pedunculopontine tegmental nucleus
nTPM: 35.0
2334 Male, age 80, both hemispheres 36.6
2338 Male, age 61, both hemispheres 34.6
1921 Female, age 85, both hemispheres 33.7
Periaquaductal grey, anterior
nTPM: 35.4
2502 Female, age 75, unknown 35.5
1795 Male, age 51, unknown 35.3
1947 Male, age 18, unknown 35.3
Periaquaductal grey, dorsal
nTPM: 34.8
2850 Male, age 76, both hemispheres 35.3
1840 Male, age 53, unknown 34.9
1831 Male, age 72, unknown 34.7
2464 Female, age 72, unknown 34.4
Periaquaductal grey, lateral
nTPM: 34.3
2140 Male, age 76, both hemispheres 35.1
2053 Male, age 18, unknown 34.4
2272 Male, age 74, both hemispheres 33.3
Pretectal area
nTPM: 35.5
1816 Male, age 51, unknown 37.7
2007 Male, age 72, unknown 37.0
1817 Female, age 42, unknown 36.4
1815 Male, age 53, unknown 36.0
2825 Male, age 18, unknown 36.0
2407 Male, age 75, both hemispheres 35.8
2316 Male, age 76, right hemisphere 34.9
1944 Female, age 72, unknown 34.5
2273 Male, age 74, both hemispheres 34.2
2667 Female, age 75, unknown 34.2
2224 Female, age 72, unknown 33.5
Red nucleus
nTPM: 36.2
1821 Female, age 72, unknown 37.7
2584 Male, age 75, left hemisphere 37.6
2725 Female, age 75, unknown 37.4
2227 Male, age 72, unknown 37.3
2588 Male, age 74, left hemisphere 36.0
2769 Male, age 72, unknown 36.0
2503 Female, age 72, unknown 35.7
1865 Male, age 51, unknown 35.6
2823 Male, age 76, right hemisphere 35.6
1954 Female, age 42, unknown 35.1
2785 Male, age 18, unknown 35.0
1904 Male, age 53, unknown 34.9
Substantia nigra
nTPM: 37.9
2409 Female, age 72, unknown 44.4
1916 Female, age 42, unknown 39.3
1851 Male, age 51, unknown 38.1
2699 Male, age 18, unknown 38.1
1941 Male, age 53, unknown 37.9
2665 Male, age 74, both hemispheres 37.9
2583 Male, age 75, right hemisphere 36.9
2590 Female, age 75, unknown 36.0
1889 Female, age 72, unknown 35.6
2241 Male, age 72, unknown 34.6
Superior colliculus
nTPM: 35.8
2668 Female, age 75, unknown 37.5
2087 Female, age 72, unknown 36.3
1839 Male, age 51, unknown 36.1
2261 Male, age 18, unknown 36.1
2587 Male, age 74, left hemisphere 36.1
2664 Male, age 75, both hemispheres 36.0
1796 Male, age 53, unknown 35.3
1913 Female, age 42, unknown 35.2
1995 Male, age 72, unknown 34.8
1895 Male, age 76, right hemisphere 34.4
Ventral tegmental area
nTPM: 35.7
1915 Female, age 42, unknown 37.2
2218 Male, age 76, both hemispheres 36.2
2021 Male, age 53, unknown 35.6
2410 Female, age 72, unknown 35.6
2223 Female, age 72, unknown 34.7
1942 Male, age 51, unknown 34.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.3
Samples: 139

Max nTPM: 69.5
Min nTPM: 16.8
Std nTPM: 5.3
Median nTPM: 28.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 69.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 40.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 39.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 39.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 38.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 37.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 37.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 37.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 36.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 36.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 35.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.7
FF:10158-103A5 76 years, female 103.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 70.8
Pig sample Sample description nTPM
Midbrain
nTPM: 70.9
Samples: 4

Max nTPM: 78.1
Min nTPM: 66.4
Sample A Female 78.1
Sample B Female 70.1
Sample C Male 68.8
Sample D Male 66.4
Periaqueductal gray
nTPM: 58.9
Samples: 3

Max nTPM: 70.1
Min nTPM: 51.9
Sample B Female 54.8
Sample C Male 70.1
Sample D Male 51.9
Substantia nigra
nTPM: 63.8
Samples: 4

Max nTPM: 71.3
Min nTPM: 52.3
Sample A Female 71.3
Sample B Female 52.3
Sample C Male 68.8
Sample D Male 62.7
Superior colliculi
nTPM: 67.8
Samples: 4

Max nTPM: 74.0
Min nTPM: 52.6
Sample A Female 74.0
Sample B Female 52.6
Sample C Male 70.9
Sample D Male 73.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.8
Samples: 4

Max nTPM: 33.8
Min nTPM: 29.4
Sample A Male 33.8
Sample B Male 29.4
Sample C Female 31.7
Sample D Female 32.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
69782891 Antisense, RP_050505_04_A01, Mouse strain C57BL/6J (56 days, male) 4.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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