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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:52.7 nTPM
HPA:52.7 nTPM
GTEx:37.8 nTPM
FANTOM5:55.0 Scaled Tags Per Million
Pig:17.0 nTPM
Mouse:8.4 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA005539
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 52.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.8
2481 Female, age 94, left hemisphere 48.9
2288 Male, age 75, left hemisphere 46.4
1854 Male, age 80, left hemisphere 42.4
2289 Male, age 61, right hemisphere 41.7
2290 Female, age 72, unknown 41.4
1857 Female, age 85, left hemisphere 41.1
1781 Male, age 74, unknown 40.4
2846 Female, age 79, unknown 39.9
Claustrum
nTPM: 40.9
2292 Female, age 85, both hemispheres 46.8
1956 Male, age 74, unknown 42.0
2568 Male, age 61, both hemispheres 41.5
2196 Female, age 79, unknown 40.8
2491 Male, age 75, both hemispheres 40.4
2392 Female, age 94, both hemispheres 39.8
2645 Female, age 72, unknown 39.5
2198 Male, age 80, both hemispheres 39.3
2284 Female, age 91, both hemispheres 38.3
Globus pallidus, externus
nTPM: 52.7
2646 Male, age 61, right hemisphere 63.4
1996 Male, age 80, right hemisphere 57.1
2567 Female, age 72, unknown 53.5
2772 Female, age 79, unknown 48.0
2395 Male, age 75, both hemispheres 41.7
Globus pallidus, internus
nTPM: 50.4
2037 Male, age 80, right hemisphere 53.1
2566 Female, age 72, unknown 53.0
2111 Female, age 85, right hemisphere 51.0
2778 Female, age 91, both hemispheres 50.1
1818 Male, age 74, unknown 49.6
2483 Female, age 94, right hemisphere 48.2
2287 Male, age 75, right hemisphere 47.7
Nucleus accumbens
nTPM: 42.5
2286 Male, age 75, left hemisphere 46.4
2391 Female, age 94, left hemisphere 45.6
2698 Female, age 72, unknown 44.0
2732 Male, age 80, right hemisphere 43.4
1806 Female, age 85, left hemisphere 43.1
2824 Male, age 61, right hemisphere 41.0
1783 Male, age 74, unknown 39.4
1856 Female, age 91, right hemisphere 36.9
Nucleus basalis of Meynert
nTPM: 47.7
2569 Male, age 61, both hemispheres 67.9
2484 Female, age 94, left hemisphere 43.0
2821 Male, age 75, both hemispheres 40.2
2393 Male, age 80, right hemisphere 39.6
Nucleus of the diagonal band
nTPM: 37.7
1979 Male, age 74, unknown 41.2
1812 Female, age 91, both hemispheres 38.5
2775 Male, age 80, right hemisphere 37.0
2195 Female, age 85, both hemispheres 36.4
2029 Male, age 61, right hemisphere 35.4
Olfactory tubercle
nTPM: 39.4
1846 Male, age 80, right hemisphere 42.5
2856 Male, age 75, right hemisphere 40.7
2487 Female, age 94, left hemisphere 38.1
1998 Female, age 91, both hemispheres 36.5
Putamen
nTPM: 42.1
2647 Male, age 75, left hemisphere 46.9
2482 Female, age 94, left hemisphere 46.7
2489 Female, age 72, unknown 44.9
1829 Male, age 74, unknown 43.3
1937 Female, age 91, right hemisphere 38.1
1838 Male, age 80, right hemisphere 37.6
2466 Female, age 79, unknown 37.2
Septal nuclei
nTPM: 40.8
2199 Male, age 80, right hemisphere 49.6
2394 Male, age 61, left hemisphere 43.5
2059 Female, age 85, both hemispheres 43.0
2629 Female, age 94, right hemisphere 39.4
2009 Female, age 91, both hemispheres 38.1
1960 Male, age 74, unknown 35.9
2031 Female, age 72, unknown 35.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.0
Samples: 246

Max nTPM: 85.1
Min nTPM: 9.9
Std nTPM: 14.3
Median nTPM: 31.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 85.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 81.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 77.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 71.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 71.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 71.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 65.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 64.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 64.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 62.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 61.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 30.0
Samples: 246

Max nTPM: 80.6
Min nTPM: 11.9
Std nTPM: 14.3
Median nTPM: 25.3
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 80.6
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 74.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 74.1
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 73.1
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 72.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 70.9
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 69.5
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 69.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 68.3
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 64.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 63.6
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Brain - Putamen (basal ganglia)
Average nTPM: 37.8
Samples: 205

Max nTPM: 91.8
Min nTPM: 15.6
Std nTPM: 14.3
Median nTPM: 35.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 91.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 81.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 76.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 75.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 71.7
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 71.0
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 70.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 67.6
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 65.5
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 64.5
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 64.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.0
FF:10164-103B2 76 years, female 35.0
Globus pallidus
Scaled Tags Per Million: 55.0
FF:10161-103A8 76 years, female 55.6
FF:10175-103C4 60 years, female 54.4
Nucleus accumbens
Scaled Tags Per Million: 33.4
FF:10037-101F1 23-56 years, mixed 33.4
Putamen
Scaled Tags Per Million: 24.4
FF:10176-103C5 60 years, female 24.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.0
Pig sample Sample description nTPM
Caudate
nTPM: 13.0
Samples: 4

Max nTPM: 14.1
Min nTPM: 11.7
Sample A Female 12.6
Sample B Female 14.1
Sample C Male 13.6
Sample D Male 11.7
Putamen
nTPM: 15.7
Samples: 4

Max nTPM: 20.5
Min nTPM: 12.7
Sample A Female 20.5
Sample B Female 13.9
Sample C Male 15.8
Sample D Male 12.7
Septum
nTPM: 17.0
Samples: 4

Max nTPM: 17.5
Min nTPM: 16.3
Sample A Female 17.1
Sample B Female 16.3
Sample C Male 17.2
Sample D Male 17.5
Ventral pallidum
nTPM: 16.0
Samples: 4

Max nTPM: 19.1
Min nTPM: 13.7
Sample A Female 15.8
Sample B Female 15.5
Sample C Male 19.1
Sample D Male 13.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 8.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.9
Samples: 4

Max nTPM: 7.5
Min nTPM: 6.4
Sample A Male 6.4
Sample B Male 7.0
Sample C Female 6.7
Sample D Female 7.5
Septum
nTPM: 8.5
Samples: 4

Max nTPM: 10.1
Min nTPM: 7.3
Sample A Male 7.8
Sample B Male 7.3
Sample C Female 8.6
Sample D Female 10.1
Ventral forebrain
nTPM: 6.8
Samples: 4

Max nTPM: 7.3
Min nTPM: 6.4
Sample A Male 6.9
Sample B Male 6.7
Sample C Female 6.4
Sample D Female 7.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
77790716 Antisense, RP_070208_04_A08, Mouse strain C57BL/6J (56 days, male) 0.3
69133686 Antisense, RP_050321_02_A10, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.3
77790716 Antisense, RP_070208_04_A08, Mouse strain C57BL/6J (56 days, male) 0.3
69133686 Antisense, RP_050321_02_A10, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.