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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi 		156.255
RNA expressioni
Consensus:35.5 nTPM
HPA:35.5 nTPM
GTEx:34.5 nTPM
FANTOM5:47.7 Scaled Tags Per Million
Pig:31.3 nTPM
Mouse:68.7 nTPM
Allen mouse:16.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006385Antibody CAB004611
Glial cells HighHigh
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA006385
Hippocampal formation mean intensity 156.255
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 75.874
Molecular layer of the dentate gyrus 58.655
Granular dentate gyrus 156.255
CA1 - oriens layer 40.468
CA1 - pyramidal layer 151.152
CA1 - radiatum layer 49.187
CA2 - oriens layer 38.966
CA2 - pyramidal layer 105.215
CA2 - radiatum layer 39.532
CA3 - oriens layer 30.695
CA3 - pyramidal layer 80.006
CA3 - radiatum layer 35.383
Stratum lucidum 35.361
Lacunosum moleculare 48.318
Subiculum 8.256

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 35.5
Sample id Sample description nTPM
Hippocampus
nTPM: 34.7
1855 Male, age 76, left hemisphere 35.3
2621 Female, age 67, right hemisphere 35.2
1898 Male, age 80, left hemisphere 35.1
2148 Female, age 91, left hemisphere 35.1
2529 Female, age 94, left hemisphere 34.3
1911 Female, age 85, right hemisphere 32.7
Dentate gyrus
nTPM: 33.1
2531 Female, age 67, both hemispheres 36.1
2530 Female, age 94, left hemisphere 34.2
2246 Female, age 85, both hemispheres 34.0
2010 Male, age 76, both hemispheres 31.9
1927 Female, age 91, both hemispheres 31.8
2528 Male, age 74, both hemispheres 30.6
Entorhinal gyrus
nTPM: 35.5
2613 Female, age 94, left hemisphere 37.6
1787 Male, age 76, left hemisphere 37.2
2764 Male, age 80, right hemisphere 37.0
2117 Female, age 91, right hemisphere 34.5
2686 Male, age 75, right hemisphere 34.5
1938 Female, age 85, left hemisphere 32.1
Hippocampus, CA1
nTPM: 33.6
2749 Male, age 80, left hemisphere 37.4
1873 Female, age 85, both hemispheres 34.0
2045 Male, age 76, both hemispheres 33.1
2527 Male, age 74, both hemispheres 32.4
2082 Female, age 91, right hemisphere 31.2
Hippocampus, CA2
nTPM: 32.1
1892 Male, age 76, both hemispheres 34.6
1963 Male, age 80, left hemisphere 32.6
2437 Female, age 94, left hemisphere 32.3
1940 Female, age 85, left hemisphere 32.1
2113 Female, age 91, right hemisphere 31.8
2249 Male, age 74, both hemispheres 29.4
Hippocampus, CA3
nTPM: 34.4
2620 Female, age 94, left hemisphere 39.6
2861 Female, age 67, both hemispheres 38.6
2137 Male, age 80, left hemisphere 35.6
1891 Female, age 85, both hemispheres 32.2
1867 Male, age 76, both hemispheres 31.8
2436 Male, age 74, both hemispheres 28.6
Parahippocampal cortex
nTPM: 32.6
2245 Female, age 91, both hemispheres 35.0
2532 Female, age 72, left hemisphere 34.3
2622 Female, age 67, right hemisphere 33.8
1933 Female, age 85, both hemispheres 33.1
1850 Male, age 80, both hemispheres 33.0
2018 Male, age 76, both hemispheres 32.0
1990 Female, age 91, right hemisphere 31.4
2250 Female, age 67, right hemisphere 31.3
2692 Male, age 74, both hemispheres 31.3
2693 Female, age 94, both hemispheres 31.0
Perirhinal gyrus
nTPM: 33.9
2521 Female, age 94, right hemisphere 35.0
1794 Male, age 80, right hemisphere 34.4
2848 Male, age 76, right hemisphere 34.3
1847 Female, age 91, left hemisphere 33.4
1841 Female, age 85, right hemisphere 32.6
Subiculum
nTPM: 33.6
1901 Male, age 80, both hemispheres 35.4
1977 Female, age 85, both hemispheres 34.4
2619 Male, age 74, both hemispheres 34.2
2438 Female, age 94, left hemisphere 33.2
2042 Male, age 76, both hemispheres 33.0
2729 Female, age 91, right hemisphere 31.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 34.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 34.5
Samples: 197

Max nTPM: 65.7
Min nTPM: 19.9
Std nTPM: 5.8
Median nTPM: 34.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 65.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 52.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 51.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 48.0
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 47.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 46.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 46.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 44.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 44.6
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 44.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 44.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 47.7
FF:10153-102I9 76 years, female 51.6
FF:10169-103B7 60 years, female 43.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 31.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 31.1
Samples: 4

Max nTPM: 35.2
Min nTPM: 26.5
Sample A Female 35.2
Sample B Female 32.2
Sample C Male 26.5
Sample D Male 30.3
Entorhinal cortex
nTPM: 28.1
Samples: 4

Max nTPM: 32.1
Min nTPM: 26.1
Sample A Female 32.1
Sample B Female 26.3
Sample C Male 27.9
Sample D Male 26.1
Subiculum
nTPM: 28.6
Samples: 4

Max nTPM: 37.7
Min nTPM: 24.8
Sample A Female 37.7
Sample B Female 25.8
Sample C Male 26.1
Sample D Male 24.8
Ventral hippocampus
nTPM: 31.3
Samples: 4

Max nTPM: 37.3
Min nTPM: 24.3
Sample A Female 29.1
Sample B Female 24.3
Sample C Male 37.3
Sample D Male 34.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 68.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 67.5
Samples: 4

Max nTPM: 69.3
Min nTPM: 64.1
Sample A Male 64.1
Sample B Male 67.8
Sample C Female 69.3
Sample D Female 68.7
Hippocampal formation
nTPM: 68.7
Samples: 4

Max nTPM: 73.2
Min nTPM: 63.2
Sample A Male 63.2
Sample B Male 71.8
Sample C Female 73.2
Sample D Female 66.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 16.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.8
74988738 Antisense, RP_060315_04_B06, Mouse strain C57BL/6J (56 days, male) 17.3
70598364 Antisense, RP_050407_04_E11, Mouse strain C57BL/6J (56 days, male) 16.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.