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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.2 nTPM
HPA:53.2 nTPM
GTEx:37.7 nTPM
FANTOM5:163.7 Scaled Tags Per Million
Pig:15.4 nTPM
Mouse:30.1 nTPM
Allen mouse:2.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 53.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.8
2288 Male, age 75, left hemisphere 39.2
1781 Male, age 74, unknown 38.2
1854 Male, age 80, left hemisphere 38.0
2846 Female, age 79, unknown 37.7
2481 Female, age 94, left hemisphere 36.7
1857 Female, age 85, left hemisphere 35.2
2290 Female, age 72, unknown 35.0
2289 Male, age 61, right hemisphere 34.5
Claustrum
nTPM: 44.3
2292 Female, age 85, both hemispheres 56.8
1956 Male, age 74, unknown 50.7
2196 Female, age 79, unknown 48.0
2568 Male, age 61, both hemispheres 42.3
2645 Female, age 72, unknown 41.1
2198 Male, age 80, both hemispheres 41.0
2284 Female, age 91, both hemispheres 39.9
2491 Male, age 75, both hemispheres 39.5
2392 Female, age 94, both hemispheres 39.1
Globus pallidus, externus
nTPM: 49.8
2567 Female, age 72, unknown 55.5
2646 Male, age 61, right hemisphere 51.0
1996 Male, age 80, right hemisphere 50.2
2772 Female, age 79, unknown 48.6
2395 Male, age 75, both hemispheres 43.8
Globus pallidus, internus
nTPM: 53.2
2111 Female, age 85, right hemisphere 68.7
2778 Female, age 91, both hemispheres 58.8
2566 Female, age 72, unknown 53.2
2037 Male, age 80, right hemisphere 51.7
2287 Male, age 75, right hemisphere 49.7
1818 Male, age 74, unknown 47.6
2483 Female, age 94, right hemisphere 42.7
Nucleus accumbens
nTPM: 39.1
2698 Female, age 72, unknown 43.8
2732 Male, age 80, right hemisphere 43.3
2391 Female, age 94, left hemisphere 40.7
1783 Male, age 74, unknown 38.9
2824 Male, age 61, right hemisphere 38.4
2286 Male, age 75, left hemisphere 37.2
1806 Female, age 85, left hemisphere 36.8
1856 Female, age 91, right hemisphere 33.4
Nucleus basalis of Meynert
nTPM: 41.6
2569 Male, age 61, both hemispheres 44.1
2821 Male, age 75, both hemispheres 43.2
2484 Female, age 94, left hemisphere 39.9
2393 Male, age 80, right hemisphere 39.1
Nucleus of the diagonal band
nTPM: 33.9
1979 Male, age 74, unknown 35.8
2029 Male, age 61, right hemisphere 35.6
2775 Male, age 80, right hemisphere 33.3
2195 Female, age 85, both hemispheres 32.9
1812 Female, age 91, both hemispheres 32.2
Olfactory tubercle
nTPM: 34.1
2487 Female, age 94, left hemisphere 34.4
2856 Male, age 75, right hemisphere 34.2
1846 Male, age 80, right hemisphere 34.0
1998 Female, age 91, both hemispheres 33.7
Putamen
nTPM: 39.3
2489 Female, age 72, unknown 43.1
2647 Male, age 75, left hemisphere 42.2
1829 Male, age 74, unknown 41.1
2482 Female, age 94, left hemisphere 38.5
1937 Female, age 91, right hemisphere 38.4
2466 Female, age 79, unknown 37.8
1838 Male, age 80, right hemisphere 34.2
Septal nuclei
nTPM: 35.6
2199 Male, age 80, right hemisphere 44.1
2394 Male, age 61, left hemisphere 41.8
2059 Female, age 85, both hemispheres 34.0
2629 Female, age 94, right hemisphere 33.5
2009 Female, age 91, both hemispheres 33.3
2031 Female, age 72, unknown 31.6
1960 Male, age 74, unknown 30.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 31.1
Samples: 246

Max nTPM: 68.8
Min nTPM: 16.3
Std nTPM: 7.7
Median nTPM: 29.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 68.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 53.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 52.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 52.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 52.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 51.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 50.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 48.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 48.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 47.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 47.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 30.6
Samples: 246

Max nTPM: 72.5
Min nTPM: 13.5
Std nTPM: 9.4
Median nTPM: 28.6
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 72.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 71.4
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 65.8
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 59.5
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 54.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 54.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 52.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 50.5
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 50.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 50.4
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 50.2
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Brain - Putamen (basal ganglia)
Average nTPM: 37.7
Samples: 205

Max nTPM: 93.1
Min nTPM: 19.6
Std nTPM: 8.9
Median nTPM: 36.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 93.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 64.2
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 63.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 62.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 57.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 56.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 55.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 55.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 55.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 55.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 52.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 163.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 62.8
FF:10164-103B2 76 years, female 62.8
Globus pallidus
Scaled Tags Per Million: 163.7
FF:10175-103C4 60 years, female 174.4
FF:10161-103A8 76 years, female 153.0
Nucleus accumbens
Scaled Tags Per Million: 94.0
FF:10037-101F1 23-56 years, mixed 94.0
Putamen
Scaled Tags Per Million: 82.4
FF:10176-103C5 60 years, female 82.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.4
Pig sample Sample description nTPM
Caudate
nTPM: 11.8
Samples: 4

Max nTPM: 12.5
Min nTPM: 11.5
Sample A Female 11.5
Sample B Female 11.6
Sample C Male 12.5
Sample D Male 11.7
Putamen
nTPM: 14.9
Samples: 4

Max nTPM: 20.1
Min nTPM: 10.8
Sample A Female 20.1
Sample B Female 10.8
Sample C Male 12.3
Sample D Male 16.2
Septum
nTPM: 14.1
Samples: 4

Max nTPM: 16.2
Min nTPM: 11.6
Sample A Female 16.2
Sample B Female 11.6
Sample C Male 13.5
Sample D Male 15.2
Ventral pallidum
nTPM: 15.4
Samples: 4

Max nTPM: 20.4
Min nTPM: 11.5
Sample A Female 12.0
Sample B Female 11.5
Sample C Male 20.4
Sample D Male 17.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 30.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 27.6
Samples: 4

Max nTPM: 28.9
Min nTPM: 25.5
Sample A Male 27.1
Sample B Male 28.9
Sample C Female 28.9
Sample D Female 25.5
Septum
nTPM: 28.8
Samples: 4

Max nTPM: 33.8
Min nTPM: 25.7
Sample A Male 25.8
Sample B Male 25.7
Sample C Female 29.9
Sample D Female 33.8
Ventral forebrain
nTPM: 30.1
Samples: 4

Max nTPM: 37.1
Min nTPM: 26.9
Sample A Male 37.1
Sample B Male 27.3
Sample C Female 26.9
Sample D Female 29.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.8
69015206 Antisense, RP_050310_02_E05, Mouse strain C57BL/6J (56 days, male) 1.8
Pallidum
Expression energy: 2.6
69015206 Antisense, RP_050310_02_E05, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.