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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.8 nTPM
HPA:50.8 nTPM
GTEx:45.4 nTPM
FANTOM5:178.5 Scaled Tags Per Million
Pig:19.2 nTPM
Mouse:31.9 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.0
2019 Male, age 18, unknown 50.1
1830 Male, age 51, unknown 48.9
1833 Male, age 53, unknown 48.2
2411 Female, age 72, unknown 47.1
1870 Female, age 42, unknown 46.8
2586 Male, age 75, left hemisphere 43.7
2666 Male, age 74, left hemisphere 42.8
2828 Female, age 72, unknown 42.1
2219 Male, age 76, both hemispheres 41.3
1827 Male, age 72, unknown 39.0
Dorsal raphe nucleus
nTPM: 37.7
2750 Male, age 76, both hemispheres 49.2
1828 Male, age 53, unknown 38.3
2016 Female, age 72, unknown 35.9
2047 Male, age 72, unknown 34.2
2298 Female, age 72, unknown 31.1
Inferior colliculus
nTPM: 38.3
1890 Male, age 53, unknown 40.4
1848 Female, age 42, unknown 39.6
2849 Male, age 72, unknown 38.0
2097 Female, age 72, unknown 35.4
Median raphe nucleus
nTPM: 39.3
2220 Male, age 76, midline 39.3
Pedunculopontine tegmental nucleus
nTPM: 44.5
2338 Male, age 61, both hemispheres 51.5
2334 Male, age 80, both hemispheres 42.1
1921 Female, age 85, both hemispheres 39.9
Periaquaductal grey, anterior
nTPM: 35.9
2502 Female, age 75, unknown 38.8
1947 Male, age 18, unknown 36.2
1795 Male, age 51, unknown 32.7
Periaquaductal grey, dorsal
nTPM: 34.2
2464 Female, age 72, unknown 38.3
1831 Male, age 72, unknown 35.8
2850 Male, age 76, both hemispheres 32.6
1840 Male, age 53, unknown 30.0
Periaquaductal grey, lateral
nTPM: 35.7
2053 Male, age 18, unknown 37.0
2272 Male, age 74, both hemispheres 36.8
2140 Male, age 76, both hemispheres 33.3
Pretectal area
nTPM: 40.0
1815 Male, age 53, unknown 45.1
2316 Male, age 76, right hemisphere 44.2
1817 Female, age 42, unknown 42.6
2407 Male, age 75, both hemispheres 42.4
2007 Male, age 72, unknown 41.6
1816 Male, age 51, unknown 39.5
1944 Female, age 72, unknown 39.1
2667 Female, age 75, unknown 39.0
2825 Male, age 18, unknown 36.7
2224 Female, age 72, unknown 35.3
2273 Male, age 74, both hemispheres 34.0
Red nucleus
nTPM: 50.8
1865 Male, age 51, unknown 57.4
1904 Male, age 53, unknown 56.1
2823 Male, age 76, right hemisphere 54.9
2785 Male, age 18, unknown 52.8
2769 Male, age 72, unknown 51.7
2227 Male, age 72, unknown 50.8
2503 Female, age 72, unknown 50.5
2588 Male, age 74, left hemisphere 49.1
2584 Male, age 75, left hemisphere 48.1
1821 Female, age 72, unknown 47.1
1954 Female, age 42, unknown 47.0
2725 Female, age 75, unknown 44.4
Substantia nigra
nTPM: 41.3
2583 Male, age 75, right hemisphere 46.0
2409 Female, age 72, unknown 44.8
2590 Female, age 75, unknown 42.4
1889 Female, age 72, unknown 42.2
1851 Male, age 51, unknown 41.8
2241 Male, age 72, unknown 40.5
2699 Male, age 18, unknown 40.1
2665 Male, age 74, both hemispheres 39.8
1941 Male, age 53, unknown 38.8
1916 Female, age 42, unknown 36.5
Superior colliculus
nTPM: 43.0
1913 Female, age 42, unknown 55.9
1995 Male, age 72, unknown 48.2
1895 Male, age 76, right hemisphere 44.8
2668 Female, age 75, unknown 43.6
2087 Female, age 72, unknown 41.9
2587 Male, age 74, left hemisphere 40.4
1839 Male, age 51, unknown 39.7
2261 Male, age 18, unknown 39.1
1796 Male, age 53, unknown 38.4
2664 Male, age 75, both hemispheres 37.8
Ventral tegmental area
nTPM: 41.3
2223 Female, age 72, unknown 46.9
2410 Female, age 72, unknown 43.1
2218 Male, age 76, both hemispheres 41.9
1942 Male, age 51, unknown 39.8
2021 Male, age 53, unknown 38.5
1915 Female, age 42, unknown 37.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.4
Samples: 139

Max nTPM: 147.7
Min nTPM: 20.8
Std nTPM: 19.2
Median nTPM: 40.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 147.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 145.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 94.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 93.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 88.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 86.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 79.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 77.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 76.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 72.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 70.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 178.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 178.5
FF:10158-103A5 76 years, female 178.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.2
Pig sample Sample description nTPM
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 20.5
Min nTPM: 15.2
Sample A Female 20.5
Sample B Female 15.2
Sample C Male 17.8
Sample D Male 15.9
Periaqueductal gray
nTPM: 13.1
Samples: 3

Max nTPM: 14.1
Min nTPM: 12.5
Sample B Female 14.1
Sample C Male 12.7
Sample D Male 12.5
Substantia nigra
nTPM: 19.2
Samples: 4

Max nTPM: 20.9
Min nTPM: 15.1
Sample A Female 20.9
Sample B Female 15.1
Sample C Male 20.1
Sample D Male 20.6
Superior colliculi
nTPM: 14.6
Samples: 4

Max nTPM: 17.2
Min nTPM: 9.9
Sample A Female 16.3
Sample B Female 9.9
Sample C Male 14.9
Sample D Male 17.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.9
Samples: 4

Max nTPM: 33.5
Min nTPM: 30.4
Sample A Male 32.8
Sample B Male 30.4
Sample C Female 33.5
Sample D Female 30.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
69015206 Antisense, RP_050310_02_E05, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.