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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:49.5 nTPM
HPA:49.5 nTPM
GTEx:25.2 nTPM
FANTOM5:64.1 Scaled Tags Per Million
Pig:60.5 nTPM
Mouse:7.2 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA036685Antibody HPA036686Antibody CAB033842
Glial cells Not detectedLowNot detected
Neuronal cells MediumMediumMedium







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 49.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.5
2846 Female, age 79, unknown 42.7
1854 Male, age 80, left hemisphere 40.5
2290 Female, age 72, unknown 38.9
1857 Female, age 85, left hemisphere 38.5
2288 Male, age 75, left hemisphere 37.3
2289 Male, age 61, right hemisphere 35.7
2481 Female, age 94, left hemisphere 33.1
1781 Male, age 74, unknown 33.0
Claustrum
nTPM: 36.6
1956 Male, age 74, unknown 43.4
2392 Female, age 94, both hemispheres 42.9
2491 Male, age 75, both hemispheres 42.3
2292 Female, age 85, both hemispheres 39.9
2196 Female, age 79, unknown 34.9
2568 Male, age 61, both hemispheres 33.1
2284 Female, age 91, both hemispheres 31.9
2198 Male, age 80, both hemispheres 30.9
2645 Female, age 72, unknown 30.1
Globus pallidus, externus
nTPM: 46.8
2567 Female, age 72, unknown 48.6
2395 Male, age 75, both hemispheres 48.3
1996 Male, age 80, right hemisphere 48.1
2646 Male, age 61, right hemisphere 45.4
2772 Female, age 79, unknown 43.3
Globus pallidus, internus
nTPM: 49.5
2778 Female, age 91, both hemispheres 56.0
2483 Female, age 94, right hemisphere 52.8
2111 Female, age 85, right hemisphere 50.8
2566 Female, age 72, unknown 50.4
2287 Male, age 75, right hemisphere 50.0
2037 Male, age 80, right hemisphere 44.3
1818 Male, age 74, unknown 42.6
Nucleus accumbens
nTPM: 40.7
2391 Female, age 94, left hemisphere 46.5
2732 Male, age 80, right hemisphere 43.7
2824 Male, age 61, right hemisphere 42.4
2698 Female, age 72, unknown 41.2
1806 Female, age 85, left hemisphere 39.9
1856 Female, age 91, right hemisphere 37.9
2286 Male, age 75, left hemisphere 37.7
1783 Male, age 74, unknown 36.2
Nucleus basalis of Meynert
nTPM: 41.4
2569 Male, age 61, both hemispheres 48.3
2393 Male, age 80, right hemisphere 43.0
2821 Male, age 75, both hemispheres 37.4
2484 Female, age 94, left hemisphere 37.0
Nucleus of the diagonal band
nTPM: 33.3
1979 Male, age 74, unknown 36.4
1812 Female, age 91, both hemispheres 34.2
2029 Male, age 61, right hemisphere 34.1
2775 Male, age 80, right hemisphere 31.5
2195 Female, age 85, both hemispheres 30.4
Olfactory tubercle
nTPM: 31.2
1846 Male, age 80, right hemisphere 33.8
1998 Female, age 91, both hemispheres 32.9
2487 Female, age 94, left hemisphere 29.2
2856 Male, age 75, right hemisphere 28.7
Putamen
nTPM: 37.8
1937 Female, age 91, right hemisphere 42.5
1838 Male, age 80, right hemisphere 40.6
2466 Female, age 79, unknown 39.9
1829 Male, age 74, unknown 37.8
2647 Male, age 75, left hemisphere 35.6
2489 Female, age 72, unknown 34.9
2482 Female, age 94, left hemisphere 33.4
Septal nuclei
nTPM: 34.3
2394 Male, age 61, left hemisphere 41.1
2199 Male, age 80, right hemisphere 37.1
2009 Female, age 91, both hemispheres 34.6
1960 Male, age 74, unknown 33.7
2031 Female, age 72, unknown 32.8
2059 Female, age 85, both hemispheres 31.4
2629 Female, age 94, right hemisphere 29.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.9
Samples: 246

Max nTPM: 45.2
Min nTPM: 10.6
Std nTPM: 5.4
Median nTPM: 23.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 45.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 44.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 39.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 36.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 35.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 35.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 35.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 35.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 34.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 34.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 33.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.2
Samples: 246

Max nTPM: 43.9
Min nTPM: 9.4
Std nTPM: 5.7
Median nTPM: 25.1
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 43.9
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 41.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 40.4
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 39.6
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 38.4
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 37.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 37.6
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 36.9
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 36.7
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 35.4
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 35.4
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Brain - Putamen (basal ganglia)
Average nTPM: 23.8
Samples: 205

Max nTPM: 50.7
Min nTPM: 10.1
Std nTPM: 6.9
Median nTPM: 22.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 50.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 42.0
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 41.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 40.6
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 39.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 38.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 38.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 36.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 35.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 34.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 34.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 57.1
FF:10164-103B2 76 years, female 57.1
Globus pallidus
Scaled Tags Per Million: 57.8
FF:10161-103A8 76 years, female 60.5
FF:10175-103C4 60 years, female 55.2
Nucleus accumbens
Scaled Tags Per Million: 53.0
FF:10037-101F1 23-56 years, mixed 53.0
Putamen
Scaled Tags Per Million: 64.1
FF:10176-103C5 60 years, female 64.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 60.5
Pig sample Sample description nTPM
Caudate
nTPM: 33.7
Samples: 4

Max nTPM: 38.7
Min nTPM: 29.5
Sample A Female 36.9
Sample B Female 29.6
Sample C Male 38.7
Sample D Male 29.5
Putamen
nTPM: 60.5
Samples: 4

Max nTPM: 77.7
Min nTPM: 37.2
Sample A Female 77.7
Sample B Female 37.2
Sample C Male 58.5
Sample D Male 68.5
Septum
nTPM: 42.1
Samples: 4

Max nTPM: 50.8
Min nTPM: 29.6
Sample A Female 50.8
Sample B Female 45.3
Sample C Male 29.6
Sample D Male 42.6
Ventral pallidum
nTPM: 42.4
Samples: 4

Max nTPM: 59.7
Min nTPM: 28.1
Sample A Female 28.1
Sample B Female 59.7
Sample C Male 37.7
Sample D Male 44.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.3
Samples: 4

Max nTPM: 7.6
Min nTPM: 5.5
Sample A Male 7.6
Sample B Male 5.5
Sample C Female 5.8
Sample D Female 6.2
Septum
nTPM: 7.2
Samples: 4

Max nTPM: 7.9
Min nTPM: 6.4
Sample A Male 7.9
Sample B Male 7.4
Sample C Female 7.1
Sample D Female 6.4
Ventral forebrain
nTPM: 7.3
Samples: 4

Max nTPM: 8.9
Min nTPM: 5.5
Sample A Male 8.9
Sample B Male 6.8
Sample C Female 7.8
Sample D Female 5.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
77620247 Antisense, RP_070129_03_C03, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
77620247 Antisense, RP_070129_03_C03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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