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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.3 nTPM
HPA:40.3 nTPM
GTEx:27.1 nTPM
FANTOM5:70.6 Scaled Tags Per Million
Pig:56.6 nTPM
Mouse:6.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.5
1830 Male, age 51, unknown 49.4
2411 Female, age 72, unknown 45.6
1870 Female, age 42, unknown 43.6
2666 Male, age 74, left hemisphere 43.6
1833 Male, age 53, unknown 41.7
2828 Female, age 72, unknown 39.1
1827 Male, age 72, unknown 37.7
2019 Male, age 18, unknown 33.1
2219 Male, age 76, both hemispheres 31.1
2586 Male, age 75, left hemisphere 30.4
Dorsal raphe nucleus
nTPM: 37.4
2750 Male, age 76, both hemispheres 43.0
2016 Female, age 72, unknown 41.5
2047 Male, age 72, unknown 35.5
2298 Female, age 72, unknown 33.8
1828 Male, age 53, unknown 33.2
Inferior colliculus
nTPM: 35.2
2849 Male, age 72, unknown 36.7
2097 Female, age 72, unknown 36.1
1848 Female, age 42, unknown 35.0
1890 Male, age 53, unknown 32.8
Median raphe nucleus
nTPM: 34.3
2220 Male, age 76, midline 34.3
Pedunculopontine tegmental nucleus
nTPM: 37.5
2338 Male, age 61, both hemispheres 39.7
2334 Male, age 80, both hemispheres 36.5
1921 Female, age 85, both hemispheres 36.3
Periaquaductal grey, anterior
nTPM: 38.0
1947 Male, age 18, unknown 40.8
2502 Female, age 75, unknown 39.7
1795 Male, age 51, unknown 33.4
Periaquaductal grey, dorsal
nTPM: 35.5
2464 Female, age 72, unknown 37.3
2850 Male, age 76, both hemispheres 35.0
1831 Male, age 72, unknown 34.9
1840 Male, age 53, unknown 34.9
Periaquaductal grey, lateral
nTPM: 36.5
2053 Male, age 18, unknown 41.2
2140 Male, age 76, both hemispheres 36.8
2272 Male, age 74, both hemispheres 31.4
Pretectal area
nTPM: 32.8
2825 Male, age 18, unknown 40.9
2316 Male, age 76, right hemisphere 40.8
2224 Female, age 72, unknown 37.5
2407 Male, age 75, both hemispheres 34.9
1815 Male, age 53, unknown 33.7
2273 Male, age 74, both hemispheres 31.8
1817 Female, age 42, unknown 31.0
2007 Male, age 72, unknown 29.5
1944 Female, age 72, unknown 27.5
2667 Female, age 75, unknown 27.4
1816 Male, age 51, unknown 25.5
Red nucleus
nTPM: 40.3
2588 Male, age 74, left hemisphere 44.1
1865 Male, age 51, unknown 43.3
2823 Male, age 76, right hemisphere 43.1
2503 Female, age 72, unknown 43.0
1904 Male, age 53, unknown 40.7
1821 Female, age 72, unknown 40.5
1954 Female, age 42, unknown 40.3
2769 Male, age 72, unknown 40.1
2725 Female, age 75, unknown 38.8
2227 Male, age 72, unknown 38.3
2785 Male, age 18, unknown 36.3
2584 Male, age 75, left hemisphere 35.3
Substantia nigra
nTPM: 37.8
1941 Male, age 53, unknown 47.2
2590 Female, age 75, unknown 41.0
2241 Male, age 72, unknown 39.2
2409 Female, age 72, unknown 39.1
1851 Male, age 51, unknown 38.5
2665 Male, age 74, both hemispheres 35.6
2699 Male, age 18, unknown 35.6
2583 Male, age 75, right hemisphere 34.9
1889 Female, age 72, unknown 34.5
1916 Female, age 42, unknown 32.0
Superior colliculus
nTPM: 37.1
1913 Female, age 42, unknown 44.3
1895 Male, age 76, right hemisphere 43.6
2587 Male, age 74, left hemisphere 42.5
1995 Male, age 72, unknown 42.1
2668 Female, age 75, unknown 39.3
1839 Male, age 51, unknown 38.5
1796 Male, age 53, unknown 32.4
2261 Male, age 18, unknown 32.1
2087 Female, age 72, unknown 28.9
2664 Male, age 75, both hemispheres 27.1
Ventral tegmental area
nTPM: 38.5
2223 Female, age 72, unknown 41.6
2410 Female, age 72, unknown 39.5
1942 Male, age 51, unknown 38.7
1915 Female, age 42, unknown 38.3
2021 Male, age 53, unknown 37.4
2218 Male, age 76, both hemispheres 35.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.1
Samples: 139

Max nTPM: 73.7
Min nTPM: 10.9
Std nTPM: 10.9
Median nTPM: 24.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 73.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 72.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 60.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 57.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 53.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 53.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 48.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 48.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 45.6
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 44.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 44.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.6
FF:10158-103A5 76 years, female 70.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.6
Pig sample Sample description nTPM
Midbrain
nTPM: 53.4
Samples: 4

Max nTPM: 64.1
Min nTPM: 43.4
Sample A Female 64.1
Sample B Female 58.2
Sample C Male 47.9
Sample D Male 43.4
Periaqueductal gray
nTPM: 37.5
Samples: 3

Max nTPM: 45.4
Min nTPM: 32.4
Sample B Female 34.7
Sample C Male 32.4
Sample D Male 45.4
Substantia nigra
nTPM: 53.6
Samples: 4

Max nTPM: 70.5
Min nTPM: 41.3
Sample A Female 70.5
Sample B Female 42.4
Sample C Male 41.3
Sample D Male 60.2
Superior colliculi
nTPM: 56.7
Samples: 4

Max nTPM: 66.1
Min nTPM: 30.8
Sample A Female 66.1
Sample B Female 30.8
Sample C Male 63.7
Sample D Male 66.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.0
Samples: 4

Max nTPM: 7.7
Min nTPM: 4.9
Sample A Male 7.7
Sample B Male 5.4
Sample C Female 4.9
Sample D Female 6.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
77620247 Antisense, RP_070129_03_C03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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