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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:34.1 nTPM
HPA:34.1 nTPM
GTEx:22.1 nTPM
FANTOM5:44.6 Scaled Tags Per Million
Pig:45.0 nTPM
Mouse:8.0 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036685Antibody HPA036686Antibody CAB033842
Glial cells Not detectedLowNot detected
Neuronal cells LowMediumLow







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 34.1
Sample id Sample description nTPM
Hippocampus
nTPM: 29.9
1911 Female, age 85, right hemisphere 34.5
2529 Female, age 94, left hemisphere 31.2
2621 Female, age 67, right hemisphere 30.7
1898 Male, age 80, left hemisphere 29.7
2148 Female, age 91, left hemisphere 26.8
1855 Male, age 76, left hemisphere 26.6
Dentate gyrus
nTPM: 29.9
2530 Female, age 94, left hemisphere 33.8
2010 Male, age 76, both hemispheres 30.1
2528 Male, age 74, both hemispheres 30.0
2531 Female, age 67, both hemispheres 29.4
2246 Female, age 85, both hemispheres 28.2
1927 Female, age 91, both hemispheres 27.8
Entorhinal gyrus
nTPM: 34.1
2117 Female, age 91, right hemisphere 39.5
2686 Male, age 75, right hemisphere 39.3
2764 Male, age 80, right hemisphere 34.4
1938 Female, age 85, left hemisphere 32.6
2613 Female, age 94, left hemisphere 30.0
1787 Male, age 76, left hemisphere 29.1
Hippocampus, CA1
nTPM: 27.1
2082 Female, age 91, right hemisphere 29.9
1873 Female, age 85, both hemispheres 29.8
2527 Male, age 74, both hemispheres 27.6
2045 Male, age 76, both hemispheres 25.6
2749 Male, age 80, left hemisphere 22.5
Hippocampus, CA2
nTPM: 29.9
2113 Female, age 91, right hemisphere 31.4
1963 Male, age 80, left hemisphere 31.3
2249 Male, age 74, both hemispheres 30.7
2437 Female, age 94, left hemisphere 30.6
1940 Female, age 85, left hemisphere 28.9
1892 Male, age 76, both hemispheres 26.5
Hippocampus, CA3
nTPM: 26.9
1891 Female, age 85, both hemispheres 34.8
1867 Male, age 76, both hemispheres 29.3
2137 Male, age 80, left hemisphere 25.0
2436 Male, age 74, both hemispheres 25.0
2861 Female, age 67, both hemispheres 24.5
2620 Female, age 94, left hemisphere 23.0
Parahippocampal cortex
nTPM: 32.4
1933 Female, age 85, both hemispheres 37.8
2692 Male, age 74, both hemispheres 35.1
1850 Male, age 80, both hemispheres 34.6
1990 Female, age 91, right hemisphere 34.1
2532 Female, age 72, left hemisphere 33.1
2693 Female, age 94, both hemispheres 32.5
2018 Male, age 76, both hemispheres 32.0
2245 Female, age 91, both hemispheres 31.8
2622 Female, age 67, right hemisphere 26.9
2250 Female, age 67, right hemisphere 25.9
Perirhinal gyrus
nTPM: 31.9
1841 Female, age 85, right hemisphere 33.9
1794 Male, age 80, right hemisphere 33.3
2848 Male, age 76, right hemisphere 32.6
1847 Female, age 91, left hemisphere 32.3
2521 Female, age 94, right hemisphere 27.3
Subiculum
nTPM: 33.7
2042 Male, age 76, both hemispheres 38.7
1977 Female, age 85, both hemispheres 37.2
1901 Male, age 80, both hemispheres 35.4
2438 Female, age 94, left hemisphere 31.3
2729 Female, age 91, right hemisphere 31.3
2619 Male, age 74, both hemispheres 28.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.1
Samples: 197

Max nTPM: 50.6
Min nTPM: 10.1
Std nTPM: 6.5
Median nTPM: 20.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 50.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 43.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 42.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 40.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 39.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 38.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 38.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 37.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 35.6
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 34.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 34.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 44.6
FF:10153-102I9 76 years, female 47.5
FF:10169-103B7 60 years, female 41.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 45.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 45.1
Samples: 4

Max nTPM: 66.9
Min nTPM: 19.7
Sample A Female 55.5
Sample B Female 38.1
Sample C Male 66.9
Sample D Male 19.7
Entorhinal cortex
nTPM: 32.0
Samples: 4

Max nTPM: 38.2
Min nTPM: 22.8
Sample A Female 22.8
Sample B Female 35.8
Sample C Male 38.2
Sample D Male 31.2
Subiculum
nTPM: 30.1
Samples: 4

Max nTPM: 42.3
Min nTPM: 23.1
Sample A Female 42.3
Sample B Female 27.8
Sample C Male 23.1
Sample D Male 27.1
Ventral hippocampus
nTPM: 33.0
Samples: 4

Max nTPM: 38.5
Min nTPM: 28.7
Sample A Female 28.7
Sample B Female 30.4
Sample C Male 34.5
Sample D Male 38.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 8.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 7.6
Samples: 4

Max nTPM: 10.3
Min nTPM: 5.8
Sample A Male 5.8
Sample B Male 10.3
Sample C Female 7.2
Sample D Female 6.9
Hippocampal formation
nTPM: 8.0
Samples: 4

Max nTPM: 8.6
Min nTPM: 7.5
Sample A Male 8.1
Sample B Male 8.6
Sample C Female 7.5
Sample D Female 7.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
77620247 Antisense, RP_070129_03_C03, Mouse strain C57BL/6J (56 days, male) 0.2

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