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RCN2
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi 		166.178
RNA expressioni
Consensus:44.0 nTPM
HPA:44.0 nTPM
GTEx:47.6 nTPM
FANTOM5:204.0 Scaled Tags Per Million
Pig:45.0 nTPM
Mouse:149.6 nTPM
Allen mouse:10.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA030694Antibody HPA030695
Glial cells Not detectedLow
Neuronal cells HighHigh




HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA030694
Hippocampal formation mean intensity 166.178
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 146.123
Molecular layer of the dentate gyrus 120.768
Granular dentate gyrus 154.385
CA1 - oriens layer 80.666
CA1 - pyramidal layer 111.020
CA1 - radiatum layer 74.943
CA2 - oriens layer 86.988
CA2 - pyramidal layer 115.263
CA2 - radiatum layer 86.082
CA3 - oriens layer 87.533
CA3 - pyramidal layer 166.178
CA3 - radiatum layer 92.349
Stratum lucidum 74.263
Lacunosum moleculare 89.588
Subiculum 76.765

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 44.0
Sample id Sample description nTPM
Hippocampus
nTPM: 40.7
1898 Male, age 80, left hemisphere 48.1
2529 Female, age 94, left hemisphere 40.8
1855 Male, age 76, left hemisphere 40.3
2621 Female, age 67, right hemisphere 39.3
1911 Female, age 85, right hemisphere 37.7
2148 Female, age 91, left hemisphere 37.7
Dentate gyrus
nTPM: 39.5
1927 Female, age 91, both hemispheres 43.1
2010 Male, age 76, both hemispheres 40.9
2528 Male, age 74, both hemispheres 40.1
2246 Female, age 85, both hemispheres 39.3
2530 Female, age 94, left hemisphere 37.7
2531 Female, age 67, both hemispheres 35.9
Entorhinal gyrus
nTPM: 40.6
1938 Female, age 85, left hemisphere 44.3
1787 Male, age 76, left hemisphere 41.8
2613 Female, age 94, left hemisphere 41.6
2764 Male, age 80, right hemisphere 41.4
2117 Female, age 91, right hemisphere 40.8
2686 Male, age 75, right hemisphere 33.5
Hippocampus, CA1
nTPM: 41.4
2749 Male, age 80, left hemisphere 47.5
1873 Female, age 85, both hemispheres 44.7
2527 Male, age 74, both hemispheres 41.8
2045 Male, age 76, both hemispheres 39.5
2082 Female, age 91, right hemisphere 33.8
Hippocampus, CA2
nTPM: 39.8
1892 Male, age 76, both hemispheres 46.1
1963 Male, age 80, left hemisphere 43.0
2249 Male, age 74, both hemispheres 41.1
1940 Female, age 85, left hemisphere 37.0
2437 Female, age 94, left hemisphere 36.1
2113 Female, age 91, right hemisphere 35.6
Hippocampus, CA3
nTPM: 39.8
2137 Male, age 80, left hemisphere 42.2
1867 Male, age 76, both hemispheres 42.0
2436 Male, age 74, both hemispheres 41.1
1891 Female, age 85, both hemispheres 39.3
2620 Female, age 94, left hemisphere 39.3
2861 Female, age 67, both hemispheres 34.7
Parahippocampal cortex
nTPM: 39.3
1850 Male, age 80, both hemispheres 45.2
1990 Female, age 91, right hemisphere 42.4
1933 Female, age 85, both hemispheres 42.0
2250 Female, age 67, right hemisphere 38.8
2532 Female, age 72, left hemisphere 38.6
2693 Female, age 94, both hemispheres 38.5
2018 Male, age 76, both hemispheres 37.9
2245 Female, age 91, both hemispheres 37.4
2692 Male, age 74, both hemispheres 36.7
2622 Female, age 67, right hemisphere 35.9
Perirhinal gyrus
nTPM: 44.0
1847 Female, age 91, left hemisphere 47.7
1841 Female, age 85, right hemisphere 44.4
1794 Male, age 80, right hemisphere 43.9
2848 Male, age 76, right hemisphere 42.2
2521 Female, age 94, right hemisphere 41.8
Subiculum
nTPM: 39.7
1977 Female, age 85, both hemispheres 42.1
1901 Male, age 80, both hemispheres 41.9
2438 Female, age 94, left hemisphere 41.8
2619 Male, age 74, both hemispheres 38.9
2729 Female, age 91, right hemisphere 38.1
2042 Male, age 76, both hemispheres 35.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 47.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 47.6
Samples: 197

Max nTPM: 99.9
Min nTPM: 23.0
Std nTPM: 13.8
Median nTPM: 45.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 99.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 93.7
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 90.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 88.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 84.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 83.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 82.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 79.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 76.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 74.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 74.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 204.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 204.0
FF:10169-103B7 60 years, female 268.9
FF:10153-102I9 76 years, female 139.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 45.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 38.5
Samples: 4

Max nTPM: 41.1
Min nTPM: 35.4
Sample A Female 40.8
Sample B Female 41.1
Sample C Male 36.7
Sample D Male 35.4
Entorhinal cortex
nTPM: 45.0
Samples: 4

Max nTPM: 51.9
Min nTPM: 39.5
Sample A Female 45.4
Sample B Female 51.9
Sample C Male 43.2
Sample D Male 39.5
Subiculum
nTPM: 41.9
Samples: 4

Max nTPM: 46.7
Min nTPM: 39.3
Sample A Female 46.7
Sample B Female 39.3
Sample C Male 40.3
Sample D Male 41.3
Ventral hippocampus
nTPM: 37.0
Samples: 4

Max nTPM: 39.6
Min nTPM: 35.0
Sample A Female 39.6
Sample B Female 35.0
Sample C Male 37.3
Sample D Male 36.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 149.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 149.6
Samples: 4

Max nTPM: 157.6
Min nTPM: 141.3
Sample A Male 141.3
Sample B Male 143.1
Sample C Female 157.6
Sample D Female 156.2
Hippocampal formation
nTPM: 129.4
Samples: 4

Max nTPM: 149.4
Min nTPM: 112.8
Sample A Male 149.4
Sample B Male 124.9
Sample C Female 112.8
Sample D Female 130.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.5
69816774 Antisense, RP_050510_01_H01, Mouse strain C57BL/6J (56 days, male) 12.2
73997151 Antisense, RP_051214_03_F10, Mouse strain C57BL/6J (56 days, male) 8.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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