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RCN2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.1 nTPM
HPA:45.1 nTPM
GTEx:46.1 nTPM
FANTOM5:101.8 Scaled Tags Per Million
Pig:36.6 nTPM
Mouse:200.9 nTPM
Allen mouse:13.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.7
2586 Male, age 75, left hemisphere 41.8
2411 Female, age 72, unknown 41.4
1870 Female, age 42, unknown 41.3
1827 Male, age 72, unknown 40.5
2219 Male, age 76, both hemispheres 39.5
1833 Male, age 53, unknown 37.6
2666 Male, age 74, left hemisphere 37.1
2828 Female, age 72, unknown 36.4
1830 Male, age 51, unknown 35.9
2019 Male, age 18, unknown 35.5
Dorsal raphe nucleus
nTPM: 41.1
2047 Male, age 72, unknown 44.4
2298 Female, age 72, unknown 44.4
2750 Male, age 76, both hemispheres 40.0
2016 Female, age 72, unknown 39.1
1828 Male, age 53, unknown 37.5
Inferior colliculus
nTPM: 40.2
2097 Female, age 72, unknown 45.0
1890 Male, age 53, unknown 39.9
1848 Female, age 42, unknown 38.6
2849 Male, age 72, unknown 37.5
Median raphe nucleus
nTPM: 45.1
2220 Male, age 76, midline 45.1
Pedunculopontine tegmental nucleus
nTPM: 37.8
1921 Female, age 85, both hemispheres 40.9
2334 Male, age 80, both hemispheres 39.2
2338 Male, age 61, both hemispheres 33.4
Periaquaductal grey, anterior
nTPM: 42.2
1947 Male, age 18, unknown 43.5
1795 Male, age 51, unknown 42.4
2502 Female, age 75, unknown 40.5
Periaquaductal grey, dorsal
nTPM: 39.4
1840 Male, age 53, unknown 42.3
2850 Male, age 76, both hemispheres 40.9
2464 Female, age 72, unknown 37.5
1831 Male, age 72, unknown 37.1
Periaquaductal grey, lateral
nTPM: 40.1
2272 Male, age 74, both hemispheres 41.5
2053 Male, age 18, unknown 40.0
2140 Male, age 76, both hemispheres 38.8
Pretectal area
nTPM: 41.4
1944 Female, age 72, unknown 45.8
2224 Female, age 72, unknown 45.3
1816 Male, age 51, unknown 43.5
2273 Male, age 74, both hemispheres 42.7
2667 Female, age 75, unknown 42.2
2007 Male, age 72, unknown 41.4
2825 Male, age 18, unknown 41.1
1815 Male, age 53, unknown 40.7
1817 Female, age 42, unknown 40.5
2316 Male, age 76, right hemisphere 37.1
2407 Male, age 75, both hemispheres 35.1
Red nucleus
nTPM: 36.2
2725 Female, age 75, unknown 39.1
2503 Female, age 72, unknown 39.0
1954 Female, age 42, unknown 38.6
1821 Female, age 72, unknown 37.4
1904 Male, age 53, unknown 36.9
2584 Male, age 75, left hemisphere 36.5
2785 Male, age 18, unknown 35.4
2588 Male, age 74, left hemisphere 35.3
2227 Male, age 72, unknown 34.9
2769 Male, age 72, unknown 34.9
1865 Male, age 51, unknown 34.5
2823 Male, age 76, right hemisphere 32.2
Substantia nigra
nTPM: 41.1
2241 Male, age 72, unknown 48.2
1916 Female, age 42, unknown 44.1
1889 Female, age 72, unknown 42.8
1851 Male, age 51, unknown 42.5
2409 Female, age 72, unknown 40.7
1941 Male, age 53, unknown 40.5
2590 Female, age 75, unknown 39.9
2583 Male, age 75, right hemisphere 38.9
2699 Male, age 18, unknown 38.9
2665 Male, age 74, both hemispheres 34.9
Superior colliculus
nTPM: 37.8
2261 Male, age 18, unknown 43.2
1796 Male, age 53, unknown 39.7
2087 Female, age 72, unknown 39.3
1895 Male, age 76, right hemisphere 37.9
1839 Male, age 51, unknown 37.5
1913 Female, age 42, unknown 37.4
2587 Male, age 74, left hemisphere 36.9
2668 Female, age 75, unknown 36.0
1995 Male, age 72, unknown 35.1
2664 Male, age 75, both hemispheres 34.7
Ventral tegmental area
nTPM: 41.2
1915 Female, age 42, unknown 43.5
1942 Male, age 51, unknown 42.7
2410 Female, age 72, unknown 41.8
2218 Male, age 76, both hemispheres 41.0
2021 Male, age 53, unknown 40.8
2223 Female, age 72, unknown 37.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.1
Samples: 139

Max nTPM: 99.4
Min nTPM: 19.8
Std nTPM: 12.9
Median nTPM: 44.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 99.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 93.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 83.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 81.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 80.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 79.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 77.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 70.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 69.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 64.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 62.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.8
FF:10158-103A5 76 years, female 101.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.6
Pig sample Sample description nTPM
Midbrain
nTPM: 36.6
Samples: 4

Max nTPM: 45.7
Min nTPM: 22.8
Sample A Female 22.8
Sample B Female 32.6
Sample C Male 45.1
Sample D Male 45.7
Periaqueductal gray
nTPM: 32.5
Samples: 3

Max nTPM: 39.0
Min nTPM: 27.4
Sample B Female 27.4
Sample C Male 39.0
Sample D Male 31.0
Substantia nigra
nTPM: 35.3
Samples: 4

Max nTPM: 47.6
Min nTPM: 18.6
Sample A Female 41.9
Sample B Female 33.0
Sample C Male 47.6
Sample D Male 18.6
Superior colliculi
nTPM: 35.2
Samples: 4

Max nTPM: 38.8
Min nTPM: 30.9
Sample A Female 35.8
Sample B Female 30.9
Sample C Male 38.8
Sample D Male 35.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 200.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 200.9
Samples: 4

Max nTPM: 205.1
Min nTPM: 193.7
Sample A Male 205.1
Sample B Male 201.9
Sample C Female 193.7
Sample D Female 203.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.2
69816774 Antisense, RP_050510_01_H01, Mouse strain C57BL/6J (56 days, male) 15.1
73997151 Antisense, RP_051214_03_F10, Mouse strain C57BL/6J (56 days, male) 11.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.