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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:118.1 nTPM
HPA:118.1 nTPM
GTEx:115.9 nTPM
FANTOM5:85.8 Scaled Tags Per Million
Pig:61.1 nTPM
Mouse:200.9 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 118.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 110.3
2411 Female, age 72, unknown 117.1
2019 Male, age 18, unknown 116.5
1870 Female, age 42, unknown 113.5
1827 Male, age 72, unknown 113.1
2666 Male, age 74, left hemisphere 110.4
2219 Male, age 76, both hemispheres 109.9
1833 Male, age 53, unknown 107.3
1830 Male, age 51, unknown 106.4
2828 Female, age 72, unknown 104.4
2586 Male, age 75, left hemisphere 104.3
Dorsal raphe nucleus
nTPM: 113.1
2047 Male, age 72, unknown 117.5
2298 Female, age 72, unknown 117.4
2750 Male, age 76, both hemispheres 115.0
1828 Male, age 53, unknown 109.0
2016 Female, age 72, unknown 106.7
Inferior colliculus
nTPM: 108.7
2097 Female, age 72, unknown 112.5
1890 Male, age 53, unknown 109.9
1848 Female, age 42, unknown 108.2
2849 Male, age 72, unknown 104.3
Median raphe nucleus
nTPM: 118.1
2220 Male, age 76, midline 118.1
Pedunculopontine tegmental nucleus
nTPM: 114.2
2334 Male, age 80, both hemispheres 117.5
1921 Female, age 85, both hemispheres 112.9
2338 Male, age 61, both hemispheres 112.4
Periaquaductal grey, anterior
nTPM: 111.6
1947 Male, age 18, unknown 113.9
2502 Female, age 75, unknown 112.6
1795 Male, age 51, unknown 108.5
Periaquaductal grey, dorsal
nTPM: 106.6
1840 Male, age 53, unknown 109.7
2464 Female, age 72, unknown 107.0
1831 Male, age 72, unknown 105.0
2850 Male, age 76, both hemispheres 104.6
Periaquaductal grey, lateral
nTPM: 105.1
2272 Male, age 74, both hemispheres 107.0
2053 Male, age 18, unknown 105.6
2140 Male, age 76, both hemispheres 102.6
Pretectal area
nTPM: 112.1
1816 Male, age 51, unknown 121.4
2007 Male, age 72, unknown 120.3
1817 Female, age 42, unknown 117.9
1944 Female, age 72, unknown 115.4
1815 Male, age 53, unknown 114.2
2224 Female, age 72, unknown 110.8
2407 Male, age 75, both hemispheres 109.5
2825 Male, age 18, unknown 107.2
2667 Female, age 75, unknown 106.1
2273 Male, age 74, both hemispheres 106.0
2316 Male, age 76, right hemisphere 104.0
Red nucleus
nTPM: 111.0
1821 Female, age 72, unknown 118.1
2588 Male, age 74, left hemisphere 117.4
2725 Female, age 75, unknown 116.5
2503 Female, age 72, unknown 113.6
2785 Male, age 18, unknown 112.3
1865 Male, age 51, unknown 110.4
1954 Female, age 42, unknown 110.2
1904 Male, age 53, unknown 109.3
2769 Male, age 72, unknown 106.6
2584 Male, age 75, left hemisphere 105.9
2823 Male, age 76, right hemisphere 105.8
2227 Male, age 72, unknown 105.4
Substantia nigra
nTPM: 115.9
2241 Male, age 72, unknown 123.5
1851 Male, age 51, unknown 121.4
1916 Female, age 42, unknown 120.8
1889 Female, age 72, unknown 118.5
1941 Male, age 53, unknown 115.7
2590 Female, age 75, unknown 114.9
2665 Male, age 74, both hemispheres 114.7
2409 Female, age 72, unknown 114.4
2699 Male, age 18, unknown 108.7
2583 Male, age 75, right hemisphere 105.9
Superior colliculus
nTPM: 108.8
2587 Male, age 74, left hemisphere 115.9
2087 Female, age 72, unknown 113.1
1796 Male, age 53, unknown 111.2
1895 Male, age 76, right hemisphere 109.6
2261 Male, age 18, unknown 109.4
2668 Female, age 75, unknown 108.6
1913 Female, age 42, unknown 108.3
1839 Male, age 51, unknown 107.1
1995 Male, age 72, unknown 104.4
2664 Male, age 75, both hemispheres 100.9
Ventral tegmental area
nTPM: 112.6
2410 Female, age 72, unknown 120.3
1915 Female, age 42, unknown 114.2
2223 Female, age 72, unknown 112.8
2021 Male, age 53, unknown 110.7
2218 Male, age 76, both hemispheres 109.8
1942 Male, age 51, unknown 108.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 115.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 115.9
Samples: 139

Max nTPM: 346.2
Min nTPM: 69.2
Std nTPM: 39.1
Median nTPM: 106.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 346.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 273.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 261.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 225.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 204.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 202.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 190.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 187.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 185.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 181.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 179.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.8
FF:10158-103A5 76 years, female 85.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.1
Pig sample Sample description nTPM
Midbrain
nTPM: 61.1
Samples: 4

Max nTPM: 79.3
Min nTPM: 49.8
Sample A Female 79.3
Sample B Female 49.8
Sample C Male 59.6
Sample D Male 55.6
Periaqueductal gray
nTPM: 50.2
Samples: 3

Max nTPM: 58.5
Min nTPM: 46.1
Sample B Female 46.1
Sample C Male 58.5
Sample D Male 46.1
Substantia nigra
nTPM: 59.9
Samples: 4

Max nTPM: 79.8
Min nTPM: 45.0
Sample A Female 79.8
Sample B Female 45.0
Sample C Male 67.2
Sample D Male 47.4
Superior colliculi
nTPM: 60.0
Samples: 4

Max nTPM: 67.2
Min nTPM: 48.2
Sample A Female 67.2
Sample B Female 48.2
Sample C Male 67.0
Sample D Male 57.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 200.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 200.9
Samples: 4

Max nTPM: 205.7
Min nTPM: 192.8
Sample A Male 203.5
Sample B Male 205.7
Sample C Female 201.5
Sample D Female 192.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
68191552 Antisense, RP_041129_01_D07, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.