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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:40.3 nTPM
HPA:40.3 nTPM
GTEx:43.1 nTPM
FANTOM5:37.0 Scaled Tags Per Million
Pig:24.0 nTPM
Mouse:3.9 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035894
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.4
2481 Female, age 94, left hemisphere 45.5
1857 Female, age 85, left hemisphere 41.2
1854 Male, age 80, left hemisphere 40.3
2290 Female, age 72, unknown 38.6
2289 Male, age 61, right hemisphere 37.9
2846 Female, age 79, unknown 37.5
2288 Male, age 75, left hemisphere 37.0
1781 Male, age 74, unknown 36.9
Claustrum
nTPM: 35.6
2491 Male, age 75, both hemispheres 38.5
2196 Female, age 79, unknown 37.0
2198 Male, age 80, both hemispheres 36.4
2284 Female, age 91, both hemispheres 36.0
2568 Male, age 61, both hemispheres 35.7
2645 Female, age 72, unknown 35.4
1956 Male, age 74, unknown 34.8
2392 Female, age 94, both hemispheres 34.6
2292 Female, age 85, both hemispheres 32.1
Globus pallidus, externus
nTPM: 38.8
2772 Female, age 79, unknown 42.0
1996 Male, age 80, right hemisphere 40.3
2646 Male, age 61, right hemisphere 38.7
2567 Female, age 72, unknown 36.6
2395 Male, age 75, both hemispheres 36.2
Globus pallidus, internus
nTPM: 37.0
2483 Female, age 94, right hemisphere 43.3
1818 Male, age 74, unknown 38.2
2037 Male, age 80, right hemisphere 37.9
2287 Male, age 75, right hemisphere 36.8
2778 Female, age 91, both hemispheres 35.7
2566 Female, age 72, unknown 35.6
2111 Female, age 85, right hemisphere 31.8
Nucleus accumbens
nTPM: 37.9
1856 Female, age 91, right hemisphere 40.2
1783 Male, age 74, unknown 39.6
1806 Female, age 85, left hemisphere 39.1
2698 Female, age 72, unknown 37.8
2286 Male, age 75, left hemisphere 37.4
2732 Male, age 80, right hemisphere 36.8
2824 Male, age 61, right hemisphere 36.6
2391 Female, age 94, left hemisphere 35.6
Nucleus basalis of Meynert
nTPM: 39.0
2569 Male, age 61, both hemispheres 41.7
2484 Female, age 94, left hemisphere 39.2
2393 Male, age 80, right hemisphere 37.6
2821 Male, age 75, both hemispheres 37.6
Nucleus of the diagonal band
nTPM: 40.3
2775 Male, age 80, right hemisphere 44.0
1812 Female, age 91, both hemispheres 42.3
2195 Female, age 85, both hemispheres 40.2
1979 Male, age 74, unknown 37.5
2029 Male, age 61, right hemisphere 37.4
Olfactory tubercle
nTPM: 39.2
1846 Male, age 80, right hemisphere 41.7
1998 Female, age 91, both hemispheres 39.6
2487 Female, age 94, left hemisphere 38.3
2856 Male, age 75, right hemisphere 37.0
Putamen
nTPM: 38.3
2482 Female, age 94, left hemisphere 41.1
1838 Male, age 80, right hemisphere 39.7
2466 Female, age 79, unknown 38.1
2647 Male, age 75, left hemisphere 38.1
1937 Female, age 91, right hemisphere 37.9
2489 Female, age 72, unknown 36.8
1829 Male, age 74, unknown 36.7
Septal nuclei
nTPM: 39.7
1960 Male, age 74, unknown 43.9
2031 Female, age 72, unknown 42.4
2059 Female, age 85, both hemispheres 40.7
2009 Female, age 91, both hemispheres 40.0
2629 Female, age 94, right hemisphere 37.5
2199 Male, age 80, right hemisphere 37.4
2394 Male, age 61, left hemisphere 36.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 43.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.6
Samples: 246

Max nTPM: 57.6
Min nTPM: 21.5
Std nTPM: 5.7
Median nTPM: 39.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 57.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 56.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 55.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 52.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 52.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 52.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 51.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 51.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 51.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 51.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 50.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 43.1
Samples: 246

Max nTPM: 72.3
Min nTPM: 19.1
Std nTPM: 6.4
Median nTPM: 42.8
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 72.3
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 59.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 59.0
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 58.8
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 58.1
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 57.6
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 55.7
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 54.5
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 54.0
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 54.0
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 53.8
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Brain - Putamen (basal ganglia)
Average nTPM: 36.6
Samples: 205

Max nTPM: 55.2
Min nTPM: 22.4
Std nTPM: 5.4
Median nTPM: 36.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 55.2
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 53.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 53.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 51.5
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 51.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 48.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 47.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 46.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 45.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 45.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 45.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 37.0
FF:10164-103B2 76 years, female 37.0
Globus pallidus
Scaled Tags Per Million: 31.9
FF:10175-103C4 60 years, female 32.3
FF:10161-103A8 76 years, female 31.4
Nucleus accumbens
Scaled Tags Per Million: 33.6
FF:10037-101F1 23-56 years, mixed 33.6
Putamen
Scaled Tags Per Million: 32.0
FF:10176-103C5 60 years, female 32.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.0
Pig sample Sample description nTPM
Caudate
nTPM: 24.1
Samples: 4

Max nTPM: 28.8
Min nTPM: 19.6
Sample A Female 19.6
Sample B Female 28.8
Sample C Male 25.7
Sample D Male 22.1
Putamen
nTPM: 18.9
Samples: 4

Max nTPM: 21.5
Min nTPM: 12.5
Sample A Female 12.5
Sample B Female 21.5
Sample C Male 20.6
Sample D Male 21.1
Septum
nTPM: 18.7
Samples: 4

Max nTPM: 21.3
Min nTPM: 13.9
Sample A Female 21.3
Sample B Female 21.1
Sample C Male 13.9
Sample D Male 18.3
Ventral pallidum
nTPM: 17.6
Samples: 4

Max nTPM: 20.7
Min nTPM: 11.5
Sample A Female 19.2
Sample B Female 20.7
Sample C Male 11.5
Sample D Male 19.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.8
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.2
Sample A Male 4.9
Sample B Male 3.7
Sample C Female 3.2
Sample D Female 3.3
Septum
nTPM: 3.9
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.8
Sample A Male 2.8
Sample B Male 4.3
Sample C Female 4.5
Sample D Female 3.8
Ventral forebrain
nTPM: 3.8
Samples: 4

Max nTPM: 4.0
Min nTPM: 3.6
Sample A Male 3.6
Sample B Male 3.9
Sample C Female 4.0
Sample D Female 3.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68633383 Antisense, RP_050125_02_G06, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.2
68633383 Antisense, RP_050125_02_G06, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

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