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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.8 nTPM
HPA:42.8 nTPM
GTEx:39.6 nTPM
FANTOM5:32.1 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:3.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.4
2586 Male, age 75, left hemisphere 46.7
2666 Male, age 74, left hemisphere 39.4
1870 Female, age 42, unknown 39.3
2828 Female, age 72, unknown 39.0
1827 Male, age 72, unknown 38.2
2411 Female, age 72, unknown 38.0
1833 Male, age 53, unknown 37.3
1830 Male, age 51, unknown 36.6
2219 Male, age 76, both hemispheres 34.8
2019 Male, age 18, unknown 34.6
Dorsal raphe nucleus
nTPM: 41.3
2047 Male, age 72, unknown 44.6
2298 Female, age 72, unknown 42.2
1828 Male, age 53, unknown 41.0
2016 Female, age 72, unknown 39.5
2750 Male, age 76, both hemispheres 39.1
Inferior colliculus
nTPM: 37.9
2097 Female, age 72, unknown 38.9
1848 Female, age 42, unknown 38.0
1890 Male, age 53, unknown 37.9
2849 Male, age 72, unknown 36.9
Median raphe nucleus
nTPM: 42.8
2220 Male, age 76, midline 42.8
Pedunculopontine tegmental nucleus
nTPM: 37.0
1921 Female, age 85, both hemispheres 37.3
2334 Male, age 80, both hemispheres 37.3
2338 Male, age 61, both hemispheres 36.3
Periaquaductal grey, anterior
nTPM: 42.4
1947 Male, age 18, unknown 44.0
2502 Female, age 75, unknown 42.4
1795 Male, age 51, unknown 40.8
Periaquaductal grey, dorsal
nTPM: 37.6
1840 Male, age 53, unknown 39.7
1831 Male, age 72, unknown 37.9
2850 Male, age 76, both hemispheres 37.8
2464 Female, age 72, unknown 35.1
Periaquaductal grey, lateral
nTPM: 37.1
2053 Male, age 18, unknown 38.3
2140 Male, age 76, both hemispheres 37.2
2272 Male, age 74, both hemispheres 35.9
Pretectal area
nTPM: 38.4
2825 Male, age 18, unknown 41.6
2224 Female, age 72, unknown 40.8
2407 Male, age 75, both hemispheres 40.3
2273 Male, age 74, both hemispheres 38.3
1816 Male, age 51, unknown 38.2
2007 Male, age 72, unknown 38.2
1815 Male, age 53, unknown 37.9
1944 Female, age 72, unknown 37.9
1817 Female, age 42, unknown 37.7
2667 Female, age 75, unknown 36.7
2316 Male, age 76, right hemisphere 34.3
Red nucleus
nTPM: 37.0
2584 Male, age 75, left hemisphere 43.6
1821 Female, age 72, unknown 38.6
2725 Female, age 75, unknown 38.0
1954 Female, age 42, unknown 37.3
2769 Male, age 72, unknown 36.9
2503 Female, age 72, unknown 36.6
2227 Male, age 72, unknown 36.5
1865 Male, age 51, unknown 36.4
1904 Male, age 53, unknown 35.7
2588 Male, age 74, left hemisphere 35.6
2785 Male, age 18, unknown 35.4
2823 Male, age 76, right hemisphere 33.9
Substantia nigra
nTPM: 40.8
1851 Male, age 51, unknown 42.3
1916 Female, age 42, unknown 42.0
2583 Male, age 75, right hemisphere 41.8
2699 Male, age 18, unknown 41.8
2241 Male, age 72, unknown 41.6
2590 Female, age 75, unknown 41.6
1941 Male, age 53, unknown 40.9
2665 Male, age 74, both hemispheres 40.3
1889 Female, age 72, unknown 39.8
2409 Female, age 72, unknown 35.7
Superior colliculus
nTPM: 37.1
2664 Male, age 75, both hemispheres 43.0
2587 Male, age 74, left hemisphere 37.9
1796 Male, age 53, unknown 37.7
1839 Male, age 51, unknown 37.7
1895 Male, age 76, right hemisphere 36.8
2668 Female, age 75, unknown 36.7
2261 Male, age 18, unknown 36.2
2087 Female, age 72, unknown 35.8
1913 Female, age 42, unknown 34.8
1995 Male, age 72, unknown 34.8
Ventral tegmental area
nTPM: 41.1
1942 Male, age 51, unknown 42.9
1915 Female, age 42, unknown 42.2
2021 Male, age 53, unknown 40.9
2223 Female, age 72, unknown 40.8
2410 Female, age 72, unknown 40.4
2218 Male, age 76, both hemispheres 39.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.6
Samples: 139

Max nTPM: 60.8
Min nTPM: 21.4
Std nTPM: 6.5
Median nTPM: 38.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 60.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 57.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 54.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 54.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 52.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 51.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 51.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 50.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 49.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 49.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 49.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.1
FF:10158-103A5 76 years, female 32.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.6
Pig sample Sample description nTPM
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 16.2
Min nTPM: 10.4
Sample A Female 16.2
Sample B Female 14.3
Sample C Male 13.6
Sample D Male 10.4
Periaqueductal gray
nTPM: 13.2
Samples: 3

Max nTPM: 16.0
Min nTPM: 11.8
Sample B Female 16.0
Sample C Male 11.8
Sample D Male 11.9
Substantia nigra
nTPM: 11.8
Samples: 4

Max nTPM: 12.4
Min nTPM: 11.3
Sample A Female 12.4
Sample B Female 11.9
Sample C Male 11.3
Sample D Male 11.7
Superior colliculi
nTPM: 12.6
Samples: 4

Max nTPM: 14.0
Min nTPM: 11.2
Sample A Female 13.8
Sample B Female 11.5
Sample C Male 14.0
Sample D Male 11.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.5
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.4
Sample A Male 3.6
Sample B Male 2.4
Sample C Female 3.8
Sample D Female 4.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68633383 Antisense, RP_050125_02_G06, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas project is funded
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