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DPF2
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:45.1 nTPM
HPA:45.1 nTPM
GTEx:29.7 nTPM
FANTOM5:79.6 Scaled Tags Per Million
Pig:35.6 nTPM
Mouse:33.5 nTPM
Allen mouse:1.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA020880
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.3
2481 Female, age 94, left hemisphere 44.2
2288 Male, age 75, left hemisphere 43.4
2290 Female, age 72, unknown 42.6
2846 Female, age 79, unknown 42.3
2289 Male, age 61, right hemisphere 42.1
1854 Male, age 80, left hemisphere 41.8
1857 Female, age 85, left hemisphere 41.2
1781 Male, age 74, unknown 40.9
Claustrum
nTPM: 39.8
1956 Male, age 74, unknown 42.7
2196 Female, age 79, unknown 41.7
2292 Female, age 85, both hemispheres 41.3
2198 Male, age 80, both hemispheres 39.9
2568 Male, age 61, both hemispheres 39.2
2491 Male, age 75, both hemispheres 39.1
2392 Female, age 94, both hemispheres 38.6
2284 Female, age 91, both hemispheres 38.1
2645 Female, age 72, unknown 37.8
Globus pallidus, externus
nTPM: 43.8
1996 Male, age 80, right hemisphere 48.7
2772 Female, age 79, unknown 45.4
2646 Male, age 61, right hemisphere 42.7
2395 Male, age 75, both hemispheres 41.8
2567 Female, age 72, unknown 40.3
Globus pallidus, internus
nTPM: 45.1
2287 Male, age 75, right hemisphere 49.6
2778 Female, age 91, both hemispheres 47.1
2111 Female, age 85, right hemisphere 45.4
1818 Male, age 74, unknown 44.1
2037 Male, age 80, right hemisphere 43.7
2483 Female, age 94, right hemisphere 43.0
2566 Female, age 72, unknown 42.8
Nucleus accumbens
nTPM: 42.1
2698 Female, age 72, unknown 45.1
2286 Male, age 75, left hemisphere 42.7
2824 Male, age 61, right hemisphere 42.2
1806 Female, age 85, left hemisphere 41.8
1783 Male, age 74, unknown 41.5
1856 Female, age 91, right hemisphere 41.3
2732 Male, age 80, right hemisphere 41.2
2391 Female, age 94, left hemisphere 41.1
Nucleus basalis of Meynert
nTPM: 40.9
2569 Male, age 61, both hemispheres 43.2
2484 Female, age 94, left hemisphere 40.6
2821 Male, age 75, both hemispheres 40.3
2393 Male, age 80, right hemisphere 39.6
Nucleus of the diagonal band
nTPM: 38.8
1812 Female, age 91, both hemispheres 40.0
1979 Male, age 74, unknown 40.0
2775 Male, age 80, right hemisphere 38.4
2195 Female, age 85, both hemispheres 38.1
2029 Male, age 61, right hemisphere 37.8
Olfactory tubercle
nTPM: 38.2
1846 Male, age 80, right hemisphere 38.6
2487 Female, age 94, left hemisphere 38.5
1998 Female, age 91, both hemispheres 37.9
2856 Male, age 75, right hemisphere 37.9
Putamen
nTPM: 40.9
2482 Female, age 94, left hemisphere 42.8
1829 Male, age 74, unknown 42.2
1838 Male, age 80, right hemisphere 41.1
1937 Female, age 91, right hemisphere 40.5
2466 Female, age 79, unknown 40.2
2647 Male, age 75, left hemisphere 39.9
2489 Female, age 72, unknown 39.5
Septal nuclei
nTPM: 38.9
2629 Female, age 94, right hemisphere 40.4
2394 Male, age 61, left hemisphere 39.4
2199 Male, age 80, right hemisphere 39.3
2031 Female, age 72, unknown 39.1
1960 Male, age 74, unknown 38.3
2009 Female, age 91, both hemispheres 37.9
2059 Female, age 85, both hemispheres 37.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.8
Samples: 246

Max nTPM: 51.8
Min nTPM: 16.4
Std nTPM: 5.0
Median nTPM: 27.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 51.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 44.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 43.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 40.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 39.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 38.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 38.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 38.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 38.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 38.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 36.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.5
Samples: 246

Max nTPM: 59.8
Min nTPM: 19.2
Std nTPM: 5.8
Median nTPM: 28.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 59.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 49.1
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 45.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 44.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 44.1
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 44.0
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 43.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 43.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 42.4
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 42.0
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 41.8
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Brain - Putamen (basal ganglia)
Average nTPM: 29.7
Samples: 205

Max nTPM: 48.8
Min nTPM: 17.7
Std nTPM: 4.9
Median nTPM: 29.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 48.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 47.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 42.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 41.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 40.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 39.4
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 38.8
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 38.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 37.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 37.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 37.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 79.6
FF:10164-103B2 76 years, female 79.6
Globus pallidus
Scaled Tags Per Million: 68.7
FF:10161-103A8 76 years, female 81.4
FF:10175-103C4 60 years, female 56.0
Nucleus accumbens
Scaled Tags Per Million: 75.6
FF:10037-101F1 23-56 years, mixed 75.6
Putamen
Scaled Tags Per Million: 65.4
FF:10176-103C5 60 years, female 65.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 35.6
Pig sample Sample description nTPM
Caudate
nTPM: 32.3
Samples: 4

Max nTPM: 36.1
Min nTPM: 29.5
Sample A Female 29.5
Sample B Female 36.1
Sample C Male 33.8
Sample D Male 29.7
Putamen
nTPM: 35.6
Samples: 4

Max nTPM: 40.7
Min nTPM: 31.4
Sample A Female 38.4
Sample B Female 31.4
Sample C Male 31.9
Sample D Male 40.7
Septum
nTPM: 34.4
Samples: 4

Max nTPM: 38.2
Min nTPM: 30.5
Sample A Female 34.6
Sample B Female 30.5
Sample C Male 34.4
Sample D Male 38.2
Ventral pallidum
nTPM: 34.6
Samples: 4

Max nTPM: 38.0
Min nTPM: 30.6
Sample A Female 30.6
Sample B Female 32.7
Sample C Male 38.0
Sample D Male 37.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 33.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 33.4
Samples: 4

Max nTPM: 35.0
Min nTPM: 32.2
Sample A Male 32.2
Sample B Male 32.3
Sample C Female 35.0
Sample D Female 34.2
Septum
nTPM: 33.5
Samples: 4

Max nTPM: 36.7
Min nTPM: 29.5
Sample A Male 29.5
Sample B Male 33.6
Sample C Female 34.2
Sample D Female 36.7
Ventral forebrain
nTPM: 33.0
Samples: 4

Max nTPM: 36.5
Min nTPM: 31.6
Sample A Male 31.6
Sample B Male 32.0
Sample C Female 31.8
Sample D Female 36.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.6
68301353 Antisense, RP_041130_01_B02, Mouse strain C57BL/6J (56 days, male) 1.6
Pallidum
Expression energy: 1.6
68301353 Antisense, RP_041130_01_B02, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.