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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:308.0 nTPM
HPA:308.0 nTPM
GTEx:315.3 nTPM
FANTOM5:1115.1 Scaled Tags Per Million
Pig:671.2 nTPM
Mouse:567.1 nTPM
Allen mouse:20.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 308.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 269.9
1870 Female, age 42, unknown 302.2
2828 Female, age 72, unknown 289.5
2219 Male, age 76, both hemispheres 284.2
2586 Male, age 75, left hemisphere 281.1
1833 Male, age 53, unknown 277.2
1830 Male, age 51, unknown 261.6
2666 Male, age 74, left hemisphere 258.5
1827 Male, age 72, unknown 249.6
2411 Female, age 72, unknown 249.6
2019 Male, age 18, unknown 245.2
Dorsal raphe nucleus
nTPM: 294.3
2298 Female, age 72, unknown 330.4
2016 Female, age 72, unknown 300.4
1828 Male, age 53, unknown 292.3
2047 Male, age 72, unknown 290.8
2750 Male, age 76, both hemispheres 257.8
Inferior colliculus
nTPM: 290.5
2097 Female, age 72, unknown 292.5
2849 Male, age 72, unknown 292.4
1890 Male, age 53, unknown 289.9
1848 Female, age 42, unknown 287.2
Median raphe nucleus
nTPM: 292.2
2220 Male, age 76, midline 292.2
Pedunculopontine tegmental nucleus
nTPM: 280.8
2334 Male, age 80, both hemispheres 287.3
1921 Female, age 85, both hemispheres 284.2
2338 Male, age 61, both hemispheres 270.8
Periaquaductal grey, anterior
nTPM: 268.4
1947 Male, age 18, unknown 279.4
2502 Female, age 75, unknown 272.0
1795 Male, age 51, unknown 253.6
Periaquaductal grey, dorsal
nTPM: 282.2
2850 Male, age 76, both hemispheres 329.8
1840 Male, age 53, unknown 290.1
1831 Male, age 72, unknown 259.4
2464 Female, age 72, unknown 249.3
Periaquaductal grey, lateral
nTPM: 290.1
2053 Male, age 18, unknown 297.0
2272 Male, age 74, both hemispheres 295.1
2140 Male, age 76, both hemispheres 278.2
Pretectal area
nTPM: 285.9
1944 Female, age 72, unknown 320.7
2224 Female, age 72, unknown 302.7
2273 Male, age 74, both hemispheres 301.2
1817 Female, age 42, unknown 300.6
1816 Male, age 51, unknown 299.2
1815 Male, age 53, unknown 296.5
2667 Female, age 75, unknown 289.0
2007 Male, age 72, unknown 276.7
2825 Male, age 18, unknown 270.6
2407 Male, age 75, both hemispheres 246.2
2316 Male, age 76, right hemisphere 241.2
Red nucleus
nTPM: 286.4
2503 Female, age 72, unknown 318.5
2725 Female, age 75, unknown 313.4
1904 Male, age 53, unknown 306.7
1954 Female, age 42, unknown 305.6
1821 Female, age 72, unknown 300.4
1865 Male, age 51, unknown 300.0
2769 Male, age 72, unknown 295.0
2823 Male, age 76, right hemisphere 286.5
2227 Male, age 72, unknown 277.1
2785 Male, age 18, unknown 271.8
2584 Male, age 75, left hemisphere 234.4
2588 Male, age 74, left hemisphere 227.5
Substantia nigra
nTPM: 308.0
1916 Female, age 42, unknown 370.5
2241 Male, age 72, unknown 330.8
2699 Male, age 18, unknown 325.8
1889 Female, age 72, unknown 319.1
1851 Male, age 51, unknown 312.7
2409 Female, age 72, unknown 307.2
2583 Male, age 75, right hemisphere 285.6
2590 Female, age 75, unknown 280.9
1941 Male, age 53, unknown 279.1
2665 Male, age 74, both hemispheres 268.0
Superior colliculus
nTPM: 278.5
1913 Female, age 42, unknown 313.1
1995 Male, age 72, unknown 305.8
2587 Male, age 74, left hemisphere 304.8
2261 Male, age 18, unknown 295.8
2087 Female, age 72, unknown 283.6
1796 Male, age 53, unknown 273.9
2668 Female, age 75, unknown 265.7
1839 Male, age 51, unknown 254.4
1895 Male, age 76, right hemisphere 252.6
2664 Male, age 75, both hemispheres 235.0
Ventral tegmental area
nTPM: 294.6
1915 Female, age 42, unknown 323.8
2218 Male, age 76, both hemispheres 315.0
1942 Male, age 51, unknown 308.7
2410 Female, age 72, unknown 275.3
2223 Female, age 72, unknown 272.6
2021 Male, age 53, unknown 272.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 315.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 315.3
Samples: 139

Max nTPM: 480.4
Min nTPM: 185.0
Std nTPM: 60.4
Median nTPM: 307.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 480.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 477.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 465.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 459.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 430.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 422.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 417.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 413.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 413.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 410.0
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 407.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1115.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1115.1
FF:10158-103A5 76 years, female 1115.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 671.2
Pig sample Sample description nTPM
Midbrain
nTPM: 671.2
Samples: 4

Max nTPM: 1152.8
Min nTPM: 463.9
Sample A Female 1152.8
Sample B Female 577.8
Sample C Male 490.3
Sample D Male 463.9
Periaqueductal gray
nTPM: 552.7
Samples: 3

Max nTPM: 585.2
Min nTPM: 523.1
Sample B Female 549.7
Sample C Male 585.2
Sample D Male 523.1
Substantia nigra
nTPM: 658.8
Samples: 4

Max nTPM: 751.8
Min nTPM: 545.6
Sample A Female 751.8
Sample B Female 646.4
Sample C Male 545.6
Sample D Male 691.3
Superior colliculi
nTPM: 589.4
Samples: 4

Max nTPM: 685.7
Min nTPM: 501.2
Sample A Female 685.7
Sample B Female 629.8
Sample C Male 501.2
Sample D Male 540.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 567.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 567.1
Samples: 4

Max nTPM: 573.5
Min nTPM: 557.5
Sample A Male 573.5
Sample B Male 567.4
Sample C Female 570.1
Sample D Female 557.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.3
532581 Antisense, RP_040810_02_C03, Mouse strain C57BL/6J (56 days, male) 20.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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