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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:40.3 nTPM
HPA:40.3 nTPM
GTEx:64.9 nTPM
FANTOM5:89.5 Scaled Tags Per Million
Pig:25.3 nTPM
Mouse:64.8 nTPM
Allen mouse:6.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA030047
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.9
2481 Female, age 94, left hemisphere 34.7
2290 Female, age 72, unknown 32.0
1781 Male, age 74, unknown 31.8
2288 Male, age 75, left hemisphere 31.6
2289 Male, age 61, right hemisphere 31.4
1857 Female, age 85, left hemisphere 28.2
2846 Female, age 79, unknown 25.0
1854 Male, age 80, left hemisphere 24.5
Claustrum
nTPM: 29.0
2292 Female, age 85, both hemispheres 35.5
1956 Male, age 74, unknown 35.4
2491 Male, age 75, both hemispheres 34.5
2198 Male, age 80, both hemispheres 31.4
2196 Female, age 79, unknown 29.6
2568 Male, age 61, both hemispheres 27.8
2645 Female, age 72, unknown 25.0
2284 Female, age 91, both hemispheres 22.1
2392 Female, age 94, both hemispheres 19.6
Globus pallidus, externus
nTPM: 39.4
1996 Male, age 80, right hemisphere 46.2
2772 Female, age 79, unknown 45.2
2395 Male, age 75, both hemispheres 39.2
2646 Male, age 61, right hemisphere 37.2
2567 Female, age 72, unknown 29.4
Globus pallidus, internus
nTPM: 40.3
2287 Male, age 75, right hemisphere 51.3
2778 Female, age 91, both hemispheres 46.8
2111 Female, age 85, right hemisphere 45.2
2483 Female, age 94, right hemisphere 37.7
2037 Male, age 80, right hemisphere 34.2
2566 Female, age 72, unknown 34.2
1818 Male, age 74, unknown 32.9
Nucleus accumbens
nTPM: 28.0
1806 Female, age 85, left hemisphere 32.9
2732 Male, age 80, right hemisphere 32.1
2286 Male, age 75, left hemisphere 31.9
1783 Male, age 74, unknown 31.8
2391 Female, age 94, left hemisphere 30.5
2698 Female, age 72, unknown 27.0
1856 Female, age 91, right hemisphere 19.5
2824 Male, age 61, right hemisphere 18.1
Nucleus basalis of Meynert
nTPM: 26.8
2569 Male, age 61, both hemispheres 42.5
2821 Male, age 75, both hemispheres 22.7
2484 Female, age 94, left hemisphere 22.5
2393 Male, age 80, right hemisphere 19.5
Nucleus of the diagonal band
nTPM: 34.4
2775 Male, age 80, right hemisphere 40.4
1812 Female, age 91, both hemispheres 37.4
2195 Female, age 85, both hemispheres 34.1
2029 Male, age 61, right hemisphere 32.0
1979 Male, age 74, unknown 27.9
Olfactory tubercle
nTPM: 27.2
1846 Male, age 80, right hemisphere 32.9
1998 Female, age 91, both hemispheres 27.3
2487 Female, age 94, left hemisphere 26.7
2856 Male, age 75, right hemisphere 21.8
Putamen
nTPM: 24.1
2482 Female, age 94, left hemisphere 30.6
2489 Female, age 72, unknown 27.1
2647 Male, age 75, left hemisphere 24.4
2466 Female, age 79, unknown 22.8
1937 Female, age 91, right hemisphere 21.5
1838 Male, age 80, right hemisphere 21.1
1829 Male, age 74, unknown 21.0
Septal nuclei
nTPM: 29.6
2031 Female, age 72, unknown 38.5
1960 Male, age 74, unknown 36.4
2059 Female, age 85, both hemispheres 33.6
2199 Male, age 80, right hemisphere 27.5
2009 Female, age 91, both hemispheres 25.6
2629 Female, age 94, right hemisphere 23.7
2394 Male, age 61, left hemisphere 22.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 64.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 62.7
Samples: 246

Max nTPM: 117.4
Min nTPM: 20.9
Std nTPM: 14.8
Median nTPM: 62.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 117.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 113.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 108.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 108.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 103.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 100.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 97.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 96.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 95.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 94.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 93.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 60.6
Samples: 246

Max nTPM: 143.8
Min nTPM: 24.0
Std nTPM: 14.0
Median nTPM: 60.9
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 143.8
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 105.2
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 97.4
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 91.0
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 90.2
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 88.8
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 85.0
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 84.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 83.9
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 83.8
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 83.8
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Brain - Putamen (basal ganglia)
Average nTPM: 64.9
Samples: 205

Max nTPM: 125.1
Min nTPM: 27.7
Std nTPM: 16.3
Median nTPM: 63.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 125.1
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 118.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 110.4
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 108.2
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 104.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 103.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 102.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 99.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 97.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 96.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 95.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 89.5
FF:10164-103B2 76 years, female 89.5
Globus pallidus
Scaled Tags Per Million: 83.7
FF:10161-103A8 76 years, female 90.1
FF:10175-103C4 60 years, female 77.3
Nucleus accumbens
Scaled Tags Per Million: 84.9
FF:10037-101F1 23-56 years, mixed 84.9
Putamen
Scaled Tags Per Million: 65.6
FF:10176-103C5 60 years, female 65.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 25.3
Pig sample Sample description nTPM
Caudate
nTPM: 20.2
Samples: 4

Max nTPM: 24.0
Min nTPM: 15.5
Sample A Female 17.7
Sample B Female 24.0
Sample C Male 23.6
Sample D Male 15.5
Putamen
nTPM: 19.1
Samples: 4

Max nTPM: 21.4
Min nTPM: 15.4
Sample A Female 20.6
Sample B Female 15.4
Sample C Male 21.4
Sample D Male 18.8
Septum
nTPM: 25.3
Samples: 4

Max nTPM: 33.7
Min nTPM: 21.7
Sample A Female 23.1
Sample B Female 21.7
Sample C Male 33.7
Sample D Male 22.7
Ventral pallidum
nTPM: 21.5
Samples: 4

Max nTPM: 30.8
Min nTPM: 16.4
Sample A Female 17.3
Sample B Female 21.3
Sample C Male 30.8
Sample D Male 16.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 64.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 58.1
Samples: 4

Max nTPM: 61.2
Min nTPM: 51.8
Sample A Male 60.8
Sample B Male 61.2
Sample C Female 51.8
Sample D Female 58.5
Septum
nTPM: 61.1
Samples: 4

Max nTPM: 63.8
Min nTPM: 54.4
Sample A Male 63.8
Sample B Male 62.5
Sample C Female 63.5
Sample D Female 54.4
Ventral forebrain
nTPM: 64.8
Samples: 4

Max nTPM: 70.1
Min nTPM: 59.7
Sample A Male 64.7
Sample B Male 59.7
Sample C Female 70.1
Sample D Female 64.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.7
68341860 Antisense, RP_041207_02_C12, Mouse strain C57BL/6J (56 days, male) 9.8
795 Antisense, RP_Baylor_102958, Mouse strain C57BL/6J (56 days, male) 3.7
Pallidum
Expression energy: 6.6
68341860 Antisense, RP_041207_02_C12, Mouse strain C57BL/6J (56 days, male) 9.3
795 Antisense, RP_Baylor_102958, Mouse strain C57BL/6J (56 days, male) 3.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.