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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.6 nTPM
HPA:45.6 nTPM
GTEx:64.5 nTPM
FANTOM5:101.6 Scaled Tags Per Million
Pig:30.1 nTPM
Mouse:35.2 nTPM
Allen mouse:6.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.3
2586 Male, age 75, left hemisphere 48.4
1870 Female, age 42, unknown 41.9
2828 Female, age 72, unknown 40.3
1827 Male, age 72, unknown 38.2
2411 Female, age 72, unknown 37.2
1833 Male, age 53, unknown 33.2
2019 Male, age 18, unknown 28.6
1830 Male, age 51, unknown 27.5
2666 Male, age 74, left hemisphere 26.9
2219 Male, age 76, both hemispheres 20.5
Dorsal raphe nucleus
nTPM: 32.9
2750 Male, age 76, both hemispheres 43.0
2298 Female, age 72, unknown 35.3
2016 Female, age 72, unknown 31.9
1828 Male, age 53, unknown 28.6
2047 Male, age 72, unknown 25.7
Inferior colliculus
nTPM: 25.6
2097 Female, age 72, unknown 27.6
1848 Female, age 42, unknown 26.6
1890 Male, age 53, unknown 26.2
2849 Male, age 72, unknown 22.0
Median raphe nucleus
nTPM: 27.1
2220 Male, age 76, midline 27.1
Pedunculopontine tegmental nucleus
nTPM: 30.0
2334 Male, age 80, both hemispheres 31.5
2338 Male, age 61, both hemispheres 29.3
1921 Female, age 85, both hemispheres 29.2
Periaquaductal grey, anterior
nTPM: 45.6
1795 Male, age 51, unknown 48.9
1947 Male, age 18, unknown 45.5
2502 Female, age 75, unknown 42.3
Periaquaductal grey, dorsal
nTPM: 27.3
2464 Female, age 72, unknown 32.4
1831 Male, age 72, unknown 29.8
1840 Male, age 53, unknown 25.3
2850 Male, age 76, both hemispheres 21.9
Periaquaductal grey, lateral
nTPM: 31.2
2272 Male, age 74, both hemispheres 36.2
2053 Male, age 18, unknown 32.3
2140 Male, age 76, both hemispheres 25.1
Pretectal area
nTPM: 37.4
1816 Male, age 51, unknown 56.5
1944 Female, age 72, unknown 49.0
2273 Male, age 74, both hemispheres 40.7
2007 Male, age 72, unknown 38.0
2667 Female, age 75, unknown 36.2
1815 Male, age 53, unknown 35.0
1817 Female, age 42, unknown 34.4
2224 Female, age 72, unknown 31.6
2825 Male, age 18, unknown 31.1
2316 Male, age 76, right hemisphere 30.7
2407 Male, age 75, both hemispheres 28.4
Red nucleus
nTPM: 34.2
1904 Male, age 53, unknown 40.9
2769 Male, age 72, unknown 39.8
2227 Male, age 72, unknown 37.8
2503 Female, age 72, unknown 36.7
1954 Female, age 42, unknown 34.2
2785 Male, age 18, unknown 34.1
2725 Female, age 75, unknown 32.6
2588 Male, age 74, left hemisphere 32.5
2823 Male, age 76, right hemisphere 32.0
1821 Female, age 72, unknown 31.4
1865 Male, age 51, unknown 30.0
2584 Male, age 75, left hemisphere 28.2
Substantia nigra
nTPM: 28.1
2590 Female, age 75, unknown 39.6
2583 Male, age 75, right hemisphere 39.3
2665 Male, age 74, both hemispheres 31.0
1851 Male, age 51, unknown 30.8
1889 Female, age 72, unknown 29.6
1916 Female, age 42, unknown 27.4
1941 Male, age 53, unknown 23.5
2699 Male, age 18, unknown 22.5
2409 Female, age 72, unknown 19.3
2241 Male, age 72, unknown 18.3
Superior colliculus
nTPM: 37.0
2261 Male, age 18, unknown 55.6
1913 Female, age 42, unknown 47.3
2087 Female, age 72, unknown 46.6
1995 Male, age 72, unknown 44.1
1796 Male, age 53, unknown 40.5
2587 Male, age 74, left hemisphere 34.1
2668 Female, age 75, unknown 28.1
2664 Male, age 75, both hemispheres 24.7
1839 Male, age 51, unknown 24.4
1895 Male, age 76, right hemisphere 24.1
Ventral tegmental area
nTPM: 31.0
2223 Female, age 72, unknown 37.0
2021 Male, age 53, unknown 32.4
1942 Male, age 51, unknown 32.3
2410 Female, age 72, unknown 31.8
1915 Female, age 42, unknown 27.2
2218 Male, age 76, both hemispheres 25.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.5
Samples: 139

Max nTPM: 145.2
Min nTPM: 30.1
Std nTPM: 20.1
Median nTPM: 60.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 145.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 117.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 116.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 110.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 110.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 107.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 107.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 107.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 104.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 102.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 98.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.6
FF:10158-103A5 76 years, female 101.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.1
Pig sample Sample description nTPM
Midbrain
nTPM: 30.1
Samples: 4

Max nTPM: 44.5
Min nTPM: 21.7
Sample A Female 44.5
Sample B Female 21.7
Sample C Male 30.5
Sample D Male 23.8
Periaqueductal gray
nTPM: 26.3
Samples: 3

Max nTPM: 33.1
Min nTPM: 21.9
Sample B Female 23.9
Sample C Male 33.1
Sample D Male 21.9
Substantia nigra
nTPM: 28.0
Samples: 4

Max nTPM: 34.8
Min nTPM: 21.9
Sample A Female 34.8
Sample B Female 23.6
Sample C Male 31.8
Sample D Male 21.9
Superior colliculi
nTPM: 27.4
Samples: 4

Max nTPM: 34.5
Min nTPM: 21.1
Sample A Female 31.5
Sample B Female 34.5
Sample C Male 22.3
Sample D Male 21.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.2
Samples: 4

Max nTPM: 37.0
Min nTPM: 33.5
Sample A Male 37.0
Sample B Male 33.5
Sample C Female 34.1
Sample D Female 36.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
68341860 Antisense, RP_041207_02_C12, Mouse strain C57BL/6J (56 days, male) 9.3
795 Antisense, RP_Baylor_102958, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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