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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:92.8 nTPM
HPA:92.8 nTPM
GTEx:85.4 nTPM
FANTOM5:61.7 Scaled Tags Per Million
Pig:64.2 nTPM
Mouse:115.6 nTPM
Allen mouse:8.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA048728Antibody HPA053422Antibody CAB026035
Glial cells HighLowHigh
Neuronal cells LowLowMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 92.8
Sample id Sample description nTPM
Hippocampus
nTPM: 92.5
2529 Female, age 94, left hemisphere 94.8
2621 Female, age 67, right hemisphere 92.8
1898 Male, age 80, left hemisphere 92.7
1911 Female, age 85, right hemisphere 92.1
1855 Male, age 76, left hemisphere 91.9
2148 Female, age 91, left hemisphere 90.5
Dentate gyrus
nTPM: 92.3
2530 Female, age 94, left hemisphere 98.2
2010 Male, age 76, both hemispheres 94.5
2531 Female, age 67, both hemispheres 91.0
2246 Female, age 85, both hemispheres 90.8
2528 Male, age 74, both hemispheres 90.7
1927 Female, age 91, both hemispheres 88.4
Entorhinal gyrus
nTPM: 90.3
2117 Female, age 91, right hemisphere 94.4
2686 Male, age 75, right hemisphere 91.9
1938 Female, age 85, left hemisphere 90.9
1787 Male, age 76, left hemisphere 89.5
2764 Male, age 80, right hemisphere 88.1
2613 Female, age 94, left hemisphere 87.2
Hippocampus, CA1
nTPM: 90.5
1873 Female, age 85, both hemispheres 92.0
2749 Male, age 80, left hemisphere 91.1
2045 Male, age 76, both hemispheres 90.7
2082 Female, age 91, right hemisphere 90.5
2527 Male, age 74, both hemispheres 88.3
Hippocampus, CA2
nTPM: 90.9
1940 Female, age 85, left hemisphere 93.5
2249 Male, age 74, both hemispheres 93.3
1963 Male, age 80, left hemisphere 91.0
2113 Female, age 91, right hemisphere 89.8
2437 Female, age 94, left hemisphere 89.3
1892 Male, age 76, both hemispheres 88.5
Hippocampus, CA3
nTPM: 92.5
2137 Male, age 80, left hemisphere 94.1
2861 Female, age 67, both hemispheres 94.1
2620 Female, age 94, left hemisphere 93.5
1891 Female, age 85, both hemispheres 93.2
2436 Male, age 74, both hemispheres 90.2
1867 Male, age 76, both hemispheres 89.9
Parahippocampal cortex
nTPM: 89.4
2532 Female, age 72, left hemisphere 91.6
2692 Male, age 74, both hemispheres 91.5
2018 Male, age 76, both hemispheres 91.1
1850 Male, age 80, both hemispheres 89.5
2622 Female, age 67, right hemisphere 89.4
1933 Female, age 85, both hemispheres 89.1
1990 Female, age 91, right hemisphere 89.1
2245 Female, age 91, both hemispheres 88.7
2250 Female, age 67, right hemisphere 87.9
2693 Female, age 94, both hemispheres 85.8
Perirhinal gyrus
nTPM: 88.5
1841 Female, age 85, right hemisphere 90.8
2848 Male, age 76, right hemisphere 89.3
1794 Male, age 80, right hemisphere 88.4
2521 Female, age 94, right hemisphere 87.1
1847 Female, age 91, left hemisphere 86.9
Subiculum
nTPM: 92.8
2042 Male, age 76, both hemispheres 96.2
1901 Male, age 80, both hemispheres 93.9
2438 Female, age 94, left hemisphere 93.7
2619 Male, age 74, both hemispheres 91.3
2729 Female, age 91, right hemisphere 91.1
1977 Female, age 85, both hemispheres 90.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 85.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 85.4
Samples: 197

Max nTPM: 159.7
Min nTPM: 51.1
Std nTPM: 17.2
Median nTPM: 82.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 159.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 143.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 141.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 127.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 126.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 122.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 120.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 118.9
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 115.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 115.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 114.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 61.7
FF:10153-102I9 76 years, female 72.1
FF:10169-103B7 60 years, female 51.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 64.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 64.2
Samples: 4

Max nTPM: 78.6
Min nTPM: 51.8
Sample A Female 78.6
Sample B Female 61.5
Sample C Male 64.8
Sample D Male 51.8
Entorhinal cortex
nTPM: 56.4
Samples: 4

Max nTPM: 64.7
Min nTPM: 48.9
Sample A Female 58.1
Sample B Female 64.7
Sample C Male 53.7
Sample D Male 48.9
Subiculum
nTPM: 50.5
Samples: 4

Max nTPM: 65.9
Min nTPM: 44.4
Sample A Female 65.9
Sample B Female 45.0
Sample C Male 46.6
Sample D Male 44.4
Ventral hippocampus
nTPM: 57.3
Samples: 4

Max nTPM: 66.5
Min nTPM: 43.9
Sample A Female 53.4
Sample B Female 43.9
Sample C Male 66.5
Sample D Male 65.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 115.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 114.6
Samples: 4

Max nTPM: 119.7
Min nTPM: 110.9
Sample A Male 115.5
Sample B Male 112.4
Sample C Female 119.7
Sample D Female 110.9
Hippocampal formation
nTPM: 115.7
Samples: 4

Max nTPM: 117.9
Min nTPM: 113.1
Sample A Male 117.0
Sample B Male 113.1
Sample C Female 114.6
Sample D Female 117.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.7
2285 Antisense, RP_040507_01_D06, Mouse strain C57BL/6J (56 days, male) 8.7
2286 Antisense, RP_040507_01_D06, Mouse strain C57BL/6J (56 days, male) 6.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.